9IMZ image
Deposition Date 2024-07-05
Release Date 2025-03-19
Last Version Date 2025-03-19
Entry Detail
PDB ID:
9IMZ
Keywords:
Title:
CODANIN-1 sequesters ASF1 by using a histone H3 mimic helix to regulate histone supply
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.75 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Codanin-1
Chain IDs:A, B
Chain Length:1241
Number of Molecules:2
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Histone chaperone ASF1A
Gene (Uniprot):ASF1A
Chain IDs:C, D, E
Chain Length:174
Number of Molecules:3
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
CODANIN-1 sequesters ASF1 by using a histone H3 mimic helix to regulate the histone supply.
Nat Commun 16 2181 2181 (2025)
PMID: 40038274 DOI: 10.1038/s41467-025-56976-7

Abstact

ASF1 is a major histone chaperone that regulates the supply of histone H3-H4 and facilitates nucleosome assembly to maintain chromatin structure during DNA replication and transcription. CODANIN-1 negatively regulates the function of ASF1. However, the molecular mechanism by which CODANIN-1 inhibits the ASF1-mediated histone supply remains elusive. Here, we present the cryo-EM structure of a human CODANIN-1_ASF1A complex at 3.75 Å resolution. The structure reveals that CODANIN-1 forms a dimer where each monomer holds two ASF1 molecules, utilizing two B-domains and two histone H3 mimic helices (HMHs). The interaction of CODANIN-1 with ASF1 via the HMH and B-domains inhibits the formation of an ASF1/H3-H4 complex and sequesters ASF1 in the cytoplasm. Our study provides a structural and molecular basis for the function of CODANIN-1 as negative regulator that highjacks ASF1 interaction sites with histones and downstream chaperones to inhibit nucleosome assembly.

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Primary Citation of related structures
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