ISDA

Deposition Date 2024-07-03

Release Date 2025-08-20

Last Version Date 2025-08-20

Entry Detail

PDB ID:

9IMM

Keywords:

VIRAL PROTEIN/RNA

Title:

SARS-CoV-2 Replication-Transcription Complex has a dimer architecture (local dRTC) in post-capping state

Biological Source:

Source Organism:

Severe acute respiratory syndrome coronavirus 2 (Taxon ID: 2697049)

Host Organism:

Escherichia coli BL21(DE3)

Method Details:

Experimental Method:

ELECTRON MICROSCOPY

Resolution:

3.22 Å

Aggregation State:

PARTICLE

Reconstruction Method:

SINGLE PARTICLE

Download Validation Report

Macromolecular Entities

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:RNA-directed RNA polymerase nsp12
Gene (Uniprot):rep
Chain IDs:A
Chain Length:932
Number of Molecules:1
Biological Source:Severe acute respiratory syndrome coronavirus 2

UniProt ID:P0DTD1 Pfam ID:PF08717, PF20632, PF20633, PF20631, PF13087, PF08710, PF06478, PF00680 EC:2.7.7.48

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Non-structural protein 8
Gene (Uniprot):rep
Chain IDs:B, D
Chain Length:198
Number of Molecules:2
Biological Source:Severe acute respiratory syndrome coronavirus 2

UniProt ID:P0DTD1 Pfam ID:PF08717, PF20632, PF20633, PF20631, PF13087, PF08710, PF06478, PF00680 EC:2.7.7.48

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Non-structural protein 7
Chain IDs:C
Chain Length:83
Number of Molecules:1
Biological Source:Severe acute respiratory syndrome coronavirus 2

UniProt ID:P0DTC1 Pfam ID:PF08716

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Helicase nsp13
Gene (Uniprot):rep
Chain IDs:E, F
Chain Length:601
Number of Molecules:2
Biological Source:Severe acute respiratory syndrome coronavirus 2

UniProt ID:P0DTD1 Pfam ID:PF08717, PF20632, PF20633, PF20631, PF13087, PF08710, PF06478, PF00680 EC:2.7.7.48

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Viral protein genome-linked nsp9
Gene (Uniprot):rep
Chain IDs:G
Chain Length:113
Number of Molecules:1
Biological Source:Severe acute respiratory syndrome coronavirus 2

UniProt ID:P0DTD1 Pfam ID:PF08717, PF20632, PF20633, PF20631, PF13087, PF08710, PF06478, PF00680 EC:2.7.7.48

Polymer Type:polyribonucleotide
Molecule:RNA (5'-D(*(ATP))-R(P*UP*UP*AP*AP*AP*GP*GP*UP*U)-3')
Chain IDs:H (auth: O)
Chain Length:10
Number of Molecules:1
Biological Source:Severe acute respiratory syndrome coronavirus 2

Polymer Type:polyribonucleotide
Molecule:RNA (40-MER)
Chain IDs:I (auth: P)
Chain Length:40
Number of Molecules:1
Biological Source:Severe acute respiratory syndrome coronavirus 2

Polymer Type:polyribonucleotide
Molecule:RNA (5'-R(P*AP*AP*CP*CP*UP*UP*CP*CP*C)-3')
Chain IDs:J (auth: Q)
Chain Length:9
Number of Molecules:1
Biological Source:Severe acute respiratory syndrome coronavirus 2

Polymer Type:polyribonucleotide
Molecule:RNA (59-MER)
Chain IDs:K (auth: R)
Chain Length:59
Number of Molecules:1
Biological Source:Severe acute respiratory syndrome coronavirus 2

Ligand Molecules

Primary Citation

Structural basis for the concurrence of template recycling and RNA capping in SARS-CoV-2

Yan, L.M, Rao, Z.H, Lou, Z.Y.Show

To Be Published ? ? ? (?)

Primary Citation of related structures