9ILS image
Deposition Date 2024-07-01
Release Date 2025-03-05
Last Version Date 2025-05-28
Entry Detail
PDB ID:
9ILS
Keywords:
Title:
The GmvT toxin in complex with the C-terminal fragment of its antitoxin
Biological Source:
Source Organism:
Shigella sonnei (Taxon ID: 624)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.75 Å
R-Value Free:
0.27
R-Value Work:
0.24
R-Value Observed:
0.25
Space Group:
P 65 2 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:N-acetyltransferase
Mutations:Q100R
Chain IDs:A
Chain Length:168
Number of Molecules:1
Biological Source:Shigella sonnei
Polymer Type:polypeptide(L)
Molecule:DUF1778 domain-containing protein
Chain IDs:B
Chain Length:42
Number of Molecules:1
Biological Source:Shigella sonnei
Ligand Molecules
Primary Citation
Structural insights into the Shigella flexneri GmvAT toxin-antitoxin system.
Febs Lett. 599 1246 1259 (2025)
PMID: 39973444 DOI: 10.1002/1873-3468.70015

Abstact

Toxin-antitoxin (TA) systems are common bicistronic gene elements in bacteria and are critical for stress responses. The toxin members of the GNAT/RHH TA family can acetylate certain aminoacylated tRNA molecules and inhibit global protein translation. One member named GmvT is important for virulence plasmid maintenance in Shigella flexneri, but the underlying mechanism remains poorly understood. Here, we report the cocrystal structures of GmvT in two forms. The binding of the antitoxin mainly relies on the backbone of the toxin while the cofactor is free of contacts with the antitoxin, supported by follow-up in vitro and in vivo studies. Our study provides insight into the protein-protein/protein-ligand interactions of the GmvAT pair and the structural basis for molecular recognition.

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Primary Citation of related structures