ISDA

Deposition Date 2024-06-29

Release Date 2025-06-18

Last Version Date 2025-06-18

Entry Detail

PDB ID:

9IKZ

Keywords:

VIRAL PROTEIN/RNA

Title:

SARS-CoV-2 E-RTC bound to pRNA-nsp9 and GDP-BeF3-

Biological Source:

Source Organism:

Severe acute respiratory syndrome coronavirus 2 (Taxon ID: 2697049)

Host Organism:

Escherichia coli BL21(DE3)

Method Details:

Experimental Method:

ELECTRON MICROSCOPY

Resolution:

3.14 Å

Aggregation State:

PARTICLE

Reconstruction Method:

SINGLE PARTICLE

Download Validation Report

Macromolecular Entities

Protein Blast

Polymer Type:polypeptide(L)
Molecule:RNA-directed RNA polymerase nsp12
Gene (Uniprot):rep
Chain IDs:A
Chain Length:931
Number of Molecules:1
Biological Source:Severe acute respiratory syndrome coronavirus 2

UniProt ID:P0DTD1 Pfam ID:PF06478, PF00680, PF08717, PF20632, PF20633, PF20631, PF13087, PF08710 EC:2.7.7.48

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Non-structural protein 8
Gene (Uniprot):rep
Chain IDs:B, D
Chain Length:187
Number of Molecules:2
Biological Source:Severe acute respiratory syndrome coronavirus 2

UniProt ID:P0DTD1 Pfam ID:PF06478, PF00680, PF08717, PF20632, PF20633, PF20631, PF13087, PF08710 EC:2.7.7.48

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Non-structural protein 7
Chain IDs:C
Chain Length:78
Number of Molecules:1
Biological Source:Severe acute respiratory syndrome coronavirus 2

UniProt ID:P0DTC1 Pfam ID:PF08716

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Helicase nsp13
Gene (Uniprot):rep
Chain IDs:E, F
Chain Length:593
Number of Molecules:2
Biological Source:Severe acute respiratory syndrome coronavirus 2

UniProt ID:P0DTD1 Pfam ID:PF06478, PF00680, PF08717, PF20632, PF20633, PF20631, PF13087, PF08710 EC:2.7.7.48

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Viral protein genome-linked nsp9
Gene (Uniprot):rep
Chain IDs:G
Chain Length:113
Number of Molecules:1
Biological Source:Severe acute respiratory syndrome coronavirus 2

UniProt ID:P0DTD1 Pfam ID:PF06478, PF00680, PF08717, PF20632, PF20633, PF20631, PF13087, PF08710 EC:2.7.7.48

Polymer Type:polyribonucleotide
Molecule:RNA (25-MER)
Chain IDs:H (auth: I)
Chain Length:25
Number of Molecules:1
Biological Source:Severe acute respiratory syndrome coronavirus 2

Polymer Type:polyribonucleotide
Molecule:RNA (27-MER)
Chain IDs:I (auth: J)
Chain Length:27
Number of Molecules:1
Biological Source:Severe acute respiratory syndrome coronavirus 2

Ligand Molecules