ISDA: 9IIB

Deposition Date 2024-06-19

Release Date 2025-12-24

Last Version Date 2025-12-24

Entry Detail

PDB ID:

9IIB

Keywords:

TRANSCRIPTION

Title:

Crystal structure of NodD-EBD (Effector Binding Domain) in complex with hesperetin from Rhizobium leguminosarum bv. vicae 3841

Biological Source:

Source Organism:

Rhizobium leguminosarum (Taxon ID: 384)

Host Organism:

Escherichia coli

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

2.75 Å

R-Value Free:

0.25

R-Value Work:

0.22

R-Value Observed:

0.22

Space Group:

P 1 21 1

Download Validation Report

Macromolecular Entities

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:LysR family transcriptional regulator
Gene (Uniprot):GUK36_35585
Chain IDs:A, B, C, D
Chain Length:216
Number of Molecules:4
Biological Source:Rhizobium leguminosarum

UniProt ID:A0A6P0BW74 Pfam ID:PF03466

Ligand Molecules

6JP

GOL

Primary Citation

The molecular basis of the binding and specific activation of rhizobial NodD by flavonoids

Ruan, Y, Dong, S, Jiang, S, Wang, Y, Wu, X, Zhuang, Y, Wu, W, East, A, Xu, P, Poole, P, Zhang, Y, Murray, J.Show

Science ? ? ? (2026)

DOI: 10.1126/science.aec3061

Primary Citation of related structures

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