9IF9 image
Deposition Date 2025-02-17
Release Date 2025-03-05
Last Version Date 2025-03-26
Entry Detail
PDB ID:
9IF9
Title:
Crystal structure of the Pellino 1 FHA domain in complex with a MDC1-TQxF phosphopeptide.
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Method Details:
Experimental Method:
Resolution:
2.55 Å
R-Value Free:
0.21
R-Value Work:
0.21
R-Value Observed:
0.21
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:E3 ubiquitin-protein ligase pellino homolog 1
Gene (Uniprot):PELI1
Chain IDs:A (auth: B), B (auth: A)
Chain Length:251
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Mediator of DNA damage checkpoint protein 1
Gene (Uniprot):MDC1
Mutations:A1 Y2
Chain IDs:C, D
Chain Length:11
Number of Molecules:2
Biological Source:Homo sapiens
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
TPO C THR modified residue
Ligand Molecules
Primary Citation
MDC1 mediates Pellino recruitment to sites of DNA double-strand breaks.
Life Sci Alliance 8 ? ? (2025)
PMID: 40049731 DOI: 10.26508/lsa.202403074

Abstact

Ubiquitylation is critically implicated in the recognition and repair of DNA double-strand breaks. The adaptor protein MDC1 mediates the recruitment of the key DNA damage responsive E3 ubiquitin ligase RNF8 to the break sites. It does so by directly interacting with RNF8 in a phosphorylation-dependent manner that involves the RNF8 FHA domain, thus initiating targeted chromatin ubiquitylation at the break sites. Here, we report that MDC1 also directly binds to two additional E3 ubiquitin ligases, Pellino 1 and 2, which were recently implicated in the DNA damage response. Through a combination of biochemical, biophysical and X-ray crystallographic approaches, we reveal the molecular details of the MDC1-Pellino complexes. Furthermore, we show that in mammalian cells, MDC1 mediates Pellino recruitment to sites of DNA double-strand breaks by a direct phosphorylation-dependent interaction between the two proteins. Taken together, our findings provide new molecular insights into the ubiquitylation pathways that govern genome stability maintenance.

Legend

Protein

Chemical

Disease

Primary Citation of related structures