9IBR image
Deposition Date 2025-02-13
Release Date 2025-08-13
Last Version Date 2025-08-13
Entry Detail
PDB ID:
9IBR
Keywords:
Title:
Crystal structure of HNF4 alpha LBD complexed with GRIP-1 peptide and ESY13
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Method Details:
Experimental Method:
Resolution:
2.78 Å
R-Value Free:
0.35
R-Value Work:
0.28
R-Value Observed:
0.29
Space Group:
P 42 21 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Hepatocyte nuclear factor 4-alpha
Gene (Uniprot):HNF4A
Chain IDs:A
Chain Length:230
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Nuclear receptor coactivator 2
Chain IDs:B
Chain Length:10
Number of Molecules:1
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
A First-in-Class Hepatocyte Nuclear Factor 4 Agonist.
J.Med.Chem. 68 10410 10424 (2025)
PMID: 40336482 DOI: 10.1021/acs.jmedchem.5c00595

Abstact

Hepatocyte nuclear factor 4 (HNF4) is an orphan nuclear receptor implicated, for example, in pancreatic islet gene expression and hepatic regulation of glucose and lipid metabolism. Mutations in the HNF4α gene are responsible for the inheritable maturity-onset diabetes of the young 1 (MODY-1), supporting the therapeutic potential of HNF4 activation in metabolic diseases. However, exploration and validation of HNF4 as a therapeutic target is hindered by the lack of suitable ligands. Here, we report the development of the first high-affinity HNF4 agonists by extension of a fragment screening hit and systematic SAR elucidation. Structural modification allowed tuning of the chemotype for both HNF4 agonism and inverse agonism. X-ray structure analysis demonstrated orthosteric site occupation by the new ligand scaffold mimicking the natural fatty acid ligand binding. The most active descendant displayed low nanomolar HNF4 agonist potency and binding affinity and favorable selectivity, enabling unprecedented studies on HNF4 biology as a chemical tool.

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Primary Citation of related structures