9I8M image
Entry Detail
PDB ID:
9I8M
EMDB ID:
Keywords:
Title:
NEDD1-bound native vertebrate gamma-tubulin ring complex from Xenopus laevis, focused reconstruction
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2025-02-05
Release Date:
2025-03-19
Method Details:
Experimental Method:
Resolution:
4.30 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Gamma-tubulin complex component
Chain IDs:A, C, E, G
Chain Length:896
Number of Molecules:4
Biological Source:Xenopus laevis
Polymer Type:polypeptide(L)
Description:Gamma-tubulin complex component 3 homolog
Chain IDs:B, D, F, H, M (auth: O), N (auth: Q), O (auth: R), P (auth: S), Q (auth: T)
Chain Length:906
Number of Molecules:9
Biological Source:Xenopus laevis
Polymer Type:polypeptide(L)
Description:Gamma-tubulin complex component
Chain IDs:I, K
Chain Length:666
Number of Molecules:2
Biological Source:Xenopus laevis
Polymer Type:polypeptide(L)
Description:Gamma-tubulin complex component
Chain IDs:J
Chain Length:1019
Number of Molecules:1
Biological Source:Xenopus laevis
Polymer Type:polypeptide(L)
Description:Gamma-tubulin complex component 6
Chain IDs:L
Chain Length:1698
Number of Molecules:1
Biological Source:Xenopus laevis
Polymer Type:polypeptide(L)
Description:NEDD1 gamma-tubulin ring complex targeting factor L homeolog
Chain IDs:R (auth: U), S (auth: V), T (auth: W), U (auth: X)
Chain Length:671
Number of Molecules:4
Biological Source:Xenopus laevis
Polymer Type:polypeptide(L)
Description:Mitotic-spindle organizing protein 1
Chain IDs:V (auth: o), W (auth: p), X (auth: q), Y (auth: r), Z (auth: s), AA (auth: t)
Chain Length:906
Number of Molecules:6
Biological Source:Xenopus laevis
Ligand Molecules
Primary Citation
Structural mechanisms for centrosomal recruitment and organization of the microtubule nucleator gamma-TuRC.
Nat Commun 16 2453 2453 (2025)
PMID: 40074789 DOI: 10.1038/s41467-025-57729-2

Abstact

The γ-tubulin ring complex (γ-TuRC) acts as a structural template for microtubule formation at centrosomes, associating with two main compartments: the pericentriolar material and the centriole lumen. In the pericentriolar material, the γ-TuRC is involved in microtubule organization, while the function of the centriole lumenal pool remains unclear. The conformational landscape of the γ-TuRC, which is crucial for its activity, and its centrosomal anchoring mechanisms, which determine γ-TuRC activity and turnover, are not understood. Using cryo-electron tomography, we analyze γ-TuRCs in human cells and purified centrosomes. Pericentriolar γ-TuRCs simultaneously associate with the essential adapter NEDD1 and the microcephaly protein CDK5RAP2. NEDD1 forms a tetrameric structure at the γ-TuRC base through interactions with four GCP3/MZT1 modules and GCP5/6-specific extensions, while multiple copies of CDK5RAP2 engage the γ-TuRC in two distinct binding patterns to promote γ-TuRC closure and activation. In the centriole lumen, the microtubule branching factor Augmin tethers a condensed cluster of γ-TuRCs to the centriole wall with defined directional orientation. Centriole-lumenal γ-TuRC-Augmin is protected from degradation during interphase and released in mitosis to aid chromosome alignment. This study provides a unique view on γ-TuRC structure and molecular organization at centrosomes and identifies an important cellular function of centriole-lumenal γ-TuRCs.

Legend

Protein

Chemical

Disease

Primary Citation of related structures