9I63 image
Deposition Date 2025-01-29
Release Date 2025-04-09
Last Version Date 2025-04-09
Entry Detail
PDB ID:
9I63
Title:
Synthetic Human Saposin D glycoprotein
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Method Details:
Experimental Method:
Resolution:
1.65 Å
R-Value Free:
0.20
R-Value Work:
0.16
Space Group:
P 1 21 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Prosaposin
Gene (Uniprot):PSAP
Chain IDs:A, B
Chain Length:82
Number of Molecules:2
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Synthetic Glycoforms Reveal Carbohydrate-Dependent Bioactivity of Human Saposin D.
Angew.Chem.Int.Ed.Engl. 56 5252 5257 (2017)
PMID: 28378443 DOI: 10.1002/anie.201701362

Abstact

The main glycoforms of the hydrophobic lysosomal glycoprotein saposin D (SapD) were synthesized by native chemical ligation. An approach for the challenging solid-phase synthesis of the fragments was developed. Three SapD glycoforms were obtained following a general and robust refolding and purification protocol. A crystal structure of one glycoform confirmed its native structure and disulfide pattern. Functional assays revealed that the lipid-binding properties of three SapD glycoforms are highly affected by the single sugar moiety of SapD showing a dependency of the size and the type of N-glycan.

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Protein

Chemical

Disease

Primary Citation of related structures
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