9I5S image
Deposition Date 2025-01-28
Release Date 2025-12-10
Last Version Date 2025-12-10
Entry Detail
PDB ID:
9I5S
Keywords:
Title:
Solution structure of an intramolecular anti-parallel G-quadruplex with a 5'-end overhang.
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Method Details:
Experimental Method:
Conformers Calculated:
10
Conformers Submitted:
10
Selection Criteria:
structures with the lowest energy
Macromolecular Entities
Polymer Type:polydeoxyribonucleotide
Molecule:Human telomeric DNA G-quadruplex hteloS1[11]
Chain IDs:A
Chain Length:24
Number of Molecules:1
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
An antiparallel G-quadruplex structure with a 5'-end overhang forms predominantly at the human telomeric ds-ss DNA junction.
Chem.Commun.(Camb.) 61 17661 17664 (2025)
PMID: 41099088 DOI: 10.1039/d5cc03633j

Abstact

G-quadruplex structures formed by human telomeric sequences are highly sensitive to subtle sequence variations and local environment. While most structural studies have focused on sequences containing four uninterrupted G-tracts, the structural consequences of splitting a G-tract remain unexplored. Here, we present the NMR solution structure of a human telomeric sequence with the first G-tract split. The structure adopts an antiparallel topology with a disordered GTT segment at the 5'-end. This conformation is preferentially formed at a biologically relevant double-strand/single-strand DNA junction. These findings broaden our understanding of the structural diversity of human telomeric G-quadruplexes.

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