9I5B image
Deposition Date 2025-01-27
Release Date 2025-04-02
Last Version Date 2025-05-21
Entry Detail
PDB ID:
9I5B
Title:
Crystal structure of perlecan region 3 mutant (P1019L) construct I876-V1272 including one laminin IV-like and four laminin EGF-like domains.
Biological Source:
Source Organism:
Mus musculus (Taxon ID: 10090)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.52 Å
R-Value Free:
0.22
R-Value Work:
0.18
Space Group:
P 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Basement membrane-specific heparan sulfate proteoglycan core protein
Gene (Uniprot):Hspg2
Chain IDs:A, B
Chain Length:397
Number of Molecules:2
Biological Source:Mus musculus
Ligand Molecules
Primary Citation
Structural insights on perlecan and Schwartz-Jampel syndrome.
Matrix Biol. 138 1 7 (2025)
PMID: 40118124 DOI: 10.1016/j.matbio.2025.03.002

Abstact

Perlecan is an essential multi-domain, disulfide bond rich basement membrane protein. Mutations in perlecan cause Schwartz-Jampel syndrome and dyssegmental dysplasia. While there has been a large body of experimental work reported on perlecan, there is only minimal structural information available to date. There is no prior structural data for region 3 of perlecan in which some Schwartz-Jampel syndrome causing point mutations have been reported. Here, we produce constructs of the disulfide rich region 3 of perlecan along with five mutations previously reported to cause Schwatz-Jampel syndrome. Four of the mutations resulted in decreased yields and thermal stability compared to the wild-type protein. In contrast, the P1019L mutation was produced in good yields and showed higher thermal stability than the wild-type protein. The crystal structures for both the wild-type and P1019L mutation were solved. As expected, both showed laminin IV-like and laminin-type EGF-like domains, with the P1019L mutation resulting in only a minor conformational change in a loop region and no significant changes in regular secondary or tertiary structure.

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Primary Citation of related structures