9I4G image
Entry Detail
PDB ID:
9I4G
Keywords:
Title:
Blood Type B-converting alpha-1,3-galactosidase PpaGal from Pedobacter panaciterrae in complex with D-galactose
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2025-01-24
Release Date:
2025-03-12
Method Details:
Experimental Method:
Resolution:
2.98 Å
R-Value Free:
0.26
R-Value Work:
0.22
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Alpha-1,3-galactosidase B
Chain IDs:A, B, C, D
Chain Length:584
Number of Molecules:4
Biological Source:Pedobacter panaciterrae
Ligand Molecules
Primary Citation
Identification and Protein Engineering of Galactosidases for the Conversion of Blood Type B to Blood Type O.
Chembiochem 26 e202500072 e202500072 (2025)
PMID: 40013737 DOI: 10.1002/cbic.202500072

Abstact

The supply of blood products such as red blood cells poses a challenge due to rising demand and declining donor numbers. Careful matching of blood products of different types is required. Only type O of the blood types A, B, AB and O can be received by any patient without transfusion incompatibilities. Therefore, O-type blood can be considered "universal blood" and is especially needed in emergency situations. In this study, we focused on the conversion of the B antigen by enzymatic deglycosylation to generate the H antigen determining O-type blood. For this, we characterized several previously unstudied α-1,3-galactosidases belonging to the GH110 family. Our findings revealed that the α-1,3-galactosidase from Pedobacter panaciterrae (PpaGal) exhibits superior efficiency compared to previously described galactosidases. We further increased the activity of PpaGal by 2.5-fold using site-directed mutagenesis. Moreover, we solved two crystal structures of PpaGal, one in the apo-state and another in complex with d-galactose. The combination of our mutagenesis study with the solved crystal structures provides valuable information to guide further optimization of PpaGal or other B antigen converting enzymes paving the way for the easier production of universal blood from B-type blood.

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Primary Citation of related structures