ISDA: 9I2E

Deposition Date 2025-01-20

Release Date 2026-02-04

Last Version Date 2026-02-04

Entry Detail

PDB ID:

9I2E

Keywords:

RIBOSOME

Title:

NMT1-NAC bound human ribosome (combined translational states)

Biological Source:

Source Organism(s):

Homo sapiens (Taxon ID: 9606)

Method Details:

Experimental Method:

ELECTRON MICROSCOPY

Resolution:

2.95 Å

Aggregation State:

PARTICLE

Reconstruction Method:

SINGLE PARTICLE

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Macromolecular Entities

Polymer Type:polypeptide(L)
Molecule:Elongation factor 2
Chain IDs:A (auth: CB)
Chain Length:858
Number of Molecules:1
Biological Source:Homo sapiens

Polymer Type:polyribonucleotide
Molecule:E-site tRNA
Chain IDs:B (auth: CC)
Chain Length:85
Number of Molecules:1
Biological Source:Homo sapiens

Polymer Type:polypeptide(L)
Molecule:Isoform 2 of SERPINE1 mRNA-binding protein 1
Chain IDs:C (auth: CD)
Chain Length:402
Number of Molecules:1
Biological Source:Homo sapiens

Polymer Type:polyribonucleotide
Molecule:28S rRNA
Chain IDs:D (auth: L5)
Chain Length:5070
Number of Molecules:1
Biological Source:Homo sapiens

Polymer Type:polyribonucleotide
Molecule:5S rRNA
Chain IDs:E (auth: L7)
Chain Length:121
Number of Molecules:1
Biological Source:Homo sapiens

Polymer Type:polyribonucleotide
Molecule:5.8S rRNA
Chain IDs:F (auth: L8)
Chain Length:157
Number of Molecules:1
Biological Source:Homo sapiens

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L8
Chain IDs:G (auth: LA)
Chain Length:148
Number of Molecules:1
Biological Source:Homo sapiens

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L3
Chain IDs:H (auth: LB)
Chain Length:403
Number of Molecules:1
Biological Source:Homo sapiens

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L4
Chain IDs:I (auth: LC)
Chain Length:115
Number of Molecules:1
Biological Source:Homo sapiens

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L5
Chain IDs:J (auth: LD)
Chain Length:125
Number of Molecules:1
Biological Source:Homo sapiens

Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein eL6
Chain IDs:K (auth: LE)
Chain Length:135
Number of Molecules:1
Biological Source:Homo sapiens

Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein uL30
Chain IDs:L (auth: LF)
Chain Length:248
Number of Molecules:1
Biological Source:Homo sapiens

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L7a
Chain IDs:M (auth: LG)
Chain Length:117
Number of Molecules:1
Biological Source:Homo sapiens

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L9
Chain IDs:N (auth: LH)
Chain Length:192
Number of Molecules:1
Biological Source:Homo sapiens

Polymer Type:polypeptide(L)
Molecule:Ribosomal protein uL16-like
Chain IDs:O (auth: LI)
Chain Length:105
Number of Molecules:1
Biological Source:Homo sapiens

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L11
Chain IDs:P (auth: LJ)
Chain Length:97
Number of Molecules:1
Biological Source:Homo sapiens

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L13
Chain IDs:Q (auth: LL)
Chain Length:51
Number of Molecules:1
Biological Source:Homo sapiens

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L14
Chain IDs:R (auth: LM)
Chain Length:128
Number of Molecules:1
Biological Source:Homo sapiens

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L15
Chain IDs:S (auth: LN)
Chain Length:25
Number of Molecules:1
Biological Source:Homo sapiens

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L13a
Chain IDs:T (auth: LO)
Chain Length:106
Number of Molecules:1
Biological Source:Homo sapiens

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L17
Chain IDs:U (auth: LP)
Chain Length:92
Number of Molecules:1
Biological Source:Homo sapiens

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L18
Chain IDs:V (auth: LQ)
Chain Length:188
Number of Molecules:1
Biological Source:Homo sapiens

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L19
Chain IDs:W (auth: LR)
Chain Length:196
Number of Molecules:1
Biological Source:Homo sapiens

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L18a
Chain IDs:X (auth: LS)
Chain Length:176
Number of Molecules:1
Biological Source:Homo sapiens

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L21
Chain IDs:Y (auth: LT)
Chain Length:160
Number of Molecules:1
Biological Source:Homo sapiens

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L22
Chain IDs:Z (auth: LU)
Chain Length:128
Number of Molecules:1
Biological Source:Homo sapiens

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L23
Chain IDs:AA (auth: LV)
Chain Length:140
Number of Molecules:1
Biological Source:Homo sapiens

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L24
Chain IDs:BA (auth: LW)
Chain Length:157
Number of Molecules:1
Biological Source:Homo sapiens

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L23a
Chain IDs:CA (auth: LX)
Chain Length:156
Number of Molecules:1
Biological Source:Homo sapiens

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L26
Chain IDs:DA (auth: LY)
Chain Length:145
Number of Molecules:1
Biological Source:Homo sapiens

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L27
Chain IDs:EA (auth: LZ)
Chain Length:217
Number of Molecules:1
Biological Source:Homo sapiens

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L27a
Chain IDs:FA (auth: La)
Chain Length:148
Number of Molecules:1
Biological Source:Homo sapiens

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L29
Chain IDs:GA (auth: Lb)
Chain Length:403
Number of Molecules:1
Biological Source:Homo sapiens

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L30
Chain IDs:HA (auth: Lc)
Chain Length:115
Number of Molecules:1
Biological Source:Homo sapiens

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L31
Chain IDs:IA (auth: Ld)
Chain Length:125
Number of Molecules:1
Biological Source:Homo sapiens

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L32
Chain IDs:JA (auth: Le)
Chain Length:135
Number of Molecules:1
Biological Source:Homo sapiens

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L35a
Chain IDs:KA (auth: Lf)
Chain Length:248
Number of Molecules:1
Biological Source:Homo sapiens

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L34
Chain IDs:LA (auth: Lg)
Chain Length:117
Number of Molecules:1
Biological Source:Homo sapiens

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L35
Chain IDs:MA (auth: Lh)
Chain Length:192
Number of Molecules:1
Biological Source:Homo sapiens

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L36
Chain IDs:NA (auth: Li)
Chain Length:105
Number of Molecules:1
Biological Source:Homo sapiens

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L37
Chain IDs:OA (auth: Lj)
Chain Length:97
Number of Molecules:1
Biological Source:Homo sapiens

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L38
Chain IDs:PA (auth: Lk)
Chain Length:70
Number of Molecules:1
Biological Source:Homo sapiens

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L39
Chain IDs:QA (auth: Ll)
Chain Length:51
Number of Molecules:1
Biological Source:Homo sapiens

Polymer Type:polypeptide(L)
Molecule:Ubiquitin-60S ribosomal protein L40
Chain IDs:RA (auth: Lm)
Chain Length:128
Number of Molecules:1
Biological Source:Homo sapiens

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L41
Chain IDs:SA (auth: Ln)
Chain Length:25
Number of Molecules:1
Biological Source:Homo sapiens

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L36a
Chain IDs:TA (auth: Lo)
Chain Length:106
Number of Molecules:1
Biological Source:Homo sapiens

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L37a
Chain IDs:UA (auth: Lp)
Chain Length:92
Number of Molecules:1
Biological Source:Homo sapiens

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L28
Chain IDs:VA (auth: Lr)
Chain Length:196
Number of Molecules:1
Biological Source:Homo sapiens

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L10a
Chain IDs:WA (auth: Lz)
Chain Length:217
Number of Molecules:1
Biological Source:Homo sapiens

Polymer Type:polypeptide(L)
Molecule:Nascent polypeptide-associated complex subunit alpha
Chain IDs:XA (auth: NA)
Chain Length:215
Number of Molecules:1
Biological Source:Homo sapiens

Polymer Type:polypeptide(L)
Molecule:Isoform 2 of Transcription factor BTF3
Chain IDs:YA (auth: NB)
Chain Length:162
Number of Molecules:1
Biological Source:Homo sapiens

Polymer Type:polypeptide(L)
Molecule:Glycylpeptide N-tetradecanoyltransferase 1
Chain IDs:ZA (auth: NM)
Chain Length:496
Number of Molecules:1
Biological Source:Homo sapiens

Polymer Type:polyribonucleotide
Molecule:18S rRNA
Chain IDs:AB (auth: S2)
Chain Length:1869
Number of Molecules:1
Biological Source:Homo sapiens

Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein SA
Chain IDs:BB (auth: SA)
Chain Length:295
Number of Molecules:1
Biological Source:Homo sapiens

Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S3a
Chain IDs:CB (auth: SB)
Chain Length:84
Number of Molecules:1
Biological Source:Homo sapiens

Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S2
Chain IDs:DB (auth: SC)
Chain Length:69
Number of Molecules:1
Biological Source:Homo sapiens

Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S3
Chain IDs:EB (auth: SD)
Chain Length:243
Number of Molecules:1
Biological Source:Homo sapiens

Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S4, X isoform
Chain IDs:FB (auth: SE)
Chain Length:133
Number of Molecules:1
Biological Source:Homo sapiens

Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S5
Chain IDs:GB (auth: SF)
Chain Length:156
Number of Molecules:1
Biological Source:Homo sapiens

Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S6
Chain IDs:HB (auth: SG)
Chain Length:317
Number of Molecules:1
Biological Source:Homo sapiens

Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S7
Chain IDs:IB (auth: SH)
Chain Length:194
Number of Molecules:1
Biological Source:Homo sapiens

Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S8
Chain IDs:JB (auth: SI)
Chain Length:208
Number of Molecules:1
Biological Source:Homo sapiens

Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S9
Chain IDs:KB (auth: SJ)
Chain Length:194
Number of Molecules:1
Biological Source:Homo sapiens

Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S10
Chain IDs:LB (auth: SK)
Chain Length:165
Number of Molecules:1
Biological Source:Homo sapiens

Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S11
Chain IDs:MB (auth: SL)
Chain Length:158
Number of Molecules:1
Biological Source:Homo sapiens

Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S12
Chain IDs:NB (auth: SM)
Chain Length:132
Number of Molecules:1
Biological Source:Homo sapiens

Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S13
Chain IDs:OB (auth: SN)
Chain Length:151
Number of Molecules:1
Biological Source:Homo sapiens

Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S14
Chain IDs:PB (auth: SO)
Chain Length:151
Number of Molecules:1
Biological Source:Homo sapiens

Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S15
Chain IDs:QB (auth: SP)
Chain Length:145
Number of Molecules:1
Biological Source:Homo sapiens

Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S16
Chain IDs:RB (auth: SQ)
Chain Length:146
Number of Molecules:1
Biological Source:Homo sapiens

Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S17
Chain IDs:SB (auth: SR)
Chain Length:135
Number of Molecules:1
Biological Source:Homo sapiens

Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S18
Chain IDs:TB (auth: SS)
Chain Length:152
Number of Molecules:1
Biological Source:Homo sapiens

Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S19
Chain IDs:UB (auth: ST)
Chain Length:145
Number of Molecules:1
Biological Source:Homo sapiens

Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S20
Chain IDs:VB (auth: SU)
Chain Length:119
Number of Molecules:1
Biological Source:Homo sapiens

Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S21
Chain IDs:WB (auth: SV)
Chain Length:83
Number of Molecules:1
Biological Source:Homo sapiens

Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S15a
Chain IDs:XB (auth: SW)
Chain Length:130
Number of Molecules:1
Biological Source:Homo sapiens

Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S23
Chain IDs:YB (auth: SX)
Chain Length:143
Number of Molecules:1
Biological Source:Homo sapiens

Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S24
Chain IDs:ZB (auth: SY)
Chain Length:133
Number of Molecules:1
Biological Source:Homo sapiens

Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S25
Chain IDs:AC (auth: SZ)
Chain Length:125
Number of Molecules:1
Biological Source:Homo sapiens

Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S26
Chain IDs:BC (auth: Sa)
Chain Length:295
Number of Molecules:1
Biological Source:Homo sapiens

Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S27
Chain IDs:CC (auth: Sb)
Chain Length:84
Number of Molecules:1
Biological Source:Homo sapiens

Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S28
Chain IDs:DC (auth: Sc)
Chain Length:69
Number of Molecules:1
Biological Source:Homo sapiens

Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S29
Chain IDs:EC (auth: Sd)
Chain Length:243
Number of Molecules:1
Biological Source:Homo sapiens

Polymer Type:polypeptide(L)
Molecule:Ubiquitin-like FUBI-ribosomal protein eS30 fusion protein
Chain IDs:FC (auth: Se)
Chain Length:133
Number of Molecules:1
Biological Source:Homo sapiens

Polymer Type:polypeptide(L)
Molecule:Ubiquitin
Chain IDs:GC (auth: Sf)
Chain Length:156
Number of Molecules:1
Biological Source:Homo sapiens

Polymer Type:polypeptide(L)
Molecule:Receptor of activated protein C kinase 1
Chain IDs:HC (auth: Sg)
Chain Length:317
Number of Molecules:1
Biological Source:Homo sapiens

Ligand Molecules

Primary Citation

Structural basis of co-translational myristoylation by NMT1

Denk, T, Berninghausen, O, Beatrix, B, Meinnel, T, Giglione, C, Beckmann, R, Liebschner, D, Afonine, P.V, Baker, M.L, Bunkoczi, G, Chen, V.B, Croll, T.I, Hintze, B, Hung, L.W, Jain, S, McCoy, A.J, Moriarty, N.W, Oeffner, R.D, Poon, B.K, Prisant, M.G, Read, R.J, Richardson, J.S, Richardson, D.C, Sammito, M.D, Sobolev, O.V, Stockwell, D.H, Terwilliger, T.C, Urzhumtsev, A.G, Videau, L.L, Williams, C.J, Adams, P.D.Show

To Be Published ? ? ? (?)

Primary Citation of related structures

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