9I1W image
Deposition Date 2025-01-17
Release Date 2025-12-17
Last Version Date 2025-12-17
Entry Detail
PDB ID:
9I1W
Keywords:
RIBOSOME
Title:
High resolution structure of the thermophilic 60S ribosomal subunit of Chaetomium thermophilum
Biological Source:
Source Organism:
Thermochaetoides thermophila DSM 1495 (Taxon ID: 759272)
Method Details:
Experimental Method:
ELECTRON MICROSCOPY
Resolution:
2.38 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
9I1W validation report
Macromolecular Entities
Polymer Type:polyribonucleotide
Molecule:26S rRNA
Chain IDs:A (auth: 1)
Chain Length:3337
Number of Molecules:1
Biological Source:Thermochaetoides thermophila DSM 1495
Polymer Type:polyribonucleotide
Molecule:5S RNA
Chain IDs:B (auth: 3)
Chain Length:120
Number of Molecules:1
Biological Source:Thermochaetoides thermophila DSM 1495
Polymer Type:polyribonucleotide
Molecule:5.8S RNA
Chain IDs:C (auth: 4)
Chain Length:156
Number of Molecules:1
Biological Source:Thermochaetoides thermophila DSM 1495
Polymer Type:polyribonucleotide
Molecule:E-site tRNA (5'-R(P*CP*CP*A)-3')
Chain IDs:D (auth: 9)
Chain Length:3
Number of Molecules:1
Biological Source:Thermochaetoides thermophila DSM 1495
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L2-like protein
Gene (Uniprot):CTHT_0023090
Chain IDs:E (auth: LA)
Chain Length:149
Number of Molecules:1
Biological Source:Thermochaetoides thermophila DSM 1495
UniProt ID:G0S4P8 Pfam ID:PF00181, PF03947
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L3-like protein
Gene (Uniprot):CTHT_0004490
Chain IDs:F (auth: LB)
Chain Length:392
Number of Molecules:1
Biological Source:Thermochaetoides thermophila DSM 1495
UniProt ID:G0RXW1 Pfam ID:PF00297
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L4-like protein
Gene (Uniprot):CTHT_0061540
Chain IDs:G (auth: LC)
Chain Length:108
Number of Molecules:1
Biological Source:Thermochaetoides thermophila DSM 1495
UniProt ID:G0SFC3 Pfam ID:PF00573, PF14374
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein l5-like protein
Gene (Uniprot):HT_0063640
Chain IDs:H (auth: LD)
Chain Length:304
Number of Molecules:1
Biological Source:Thermochaetoides thermophila DSM 1495
UniProt ID:G0SEG2 Pfam ID:PF17144, PF14204
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L6
Gene (Uniprot):CTHT_0009640
Chain IDs:I (auth: LE)
Chain Length:200
Number of Molecules:1
Biological Source:Thermochaetoides thermophila DSM 1495
UniProt ID:G0S0D6 Pfam ID:PF01159
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein l7-like protein
Gene (Uniprot):CTHT_0071220
Chain IDs:J (auth: LF)
Chain Length:249
Number of Molecules:1
Biological Source:Thermochaetoides thermophila DSM 1495
UniProt ID:G0SFL0 Pfam ID:PF08079, PF00327
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L8
Gene (Uniprot):CTHT_0042550
Chain IDs:K (auth: LG)
Chain Length:119
Number of Molecules:1
Biological Source:Thermochaetoides thermophila DSM 1495
UniProt ID:G0SAJ9 Pfam ID:PF01248
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein l9-like protein
Gene (Uniprot):CTHT_0009740
Chain IDs:L (auth: LH)
Chain Length:126
Number of Molecules:1
Biological Source:Thermochaetoides thermophila DSM 1495
UniProt ID:G0S0E5 Pfam ID:PF00347
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L10-like protein
Gene (Uniprot):CTHT_0063830
Chain IDs:M (auth: LI)
Chain Length:219
Number of Molecules:1
Biological Source:Thermochaetoides thermophila DSM 1495
UniProt ID:G0SEI1 Pfam ID:PF00252
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Putative ribosomal protein
Gene (Uniprot):HT_0072970
Chain IDs:N (auth: LJ)
Chain Length:173
Number of Molecules:1
Biological Source:Thermochaetoides thermophila DSM 1495
UniProt ID:G0SHQ2 Pfam ID:PF00281, PF00673
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L12-like protein
Gene (Uniprot):CTHT_0066380
Chain IDs:O (auth: LK)
Chain Length:81
Number of Molecules:1
Biological Source:Thermochaetoides thermophila DSM 1495
UniProt ID:G0SGH8 Pfam ID:PF03946, PF00298
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L13
Gene (Uniprot):CTHT_0045000
Chain IDs:P (auth: LL)
Chain Length:213
Number of Molecules:1
Biological Source:Thermochaetoides thermophila DSM 1495
UniProt ID:G0S992 Pfam ID:PF01294
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L14-like protein
Gene (Uniprot):CTHT_0014490
Chain IDs:Q (auth: LM)
Chain Length:128
Number of Molecules:1
Biological Source:Thermochaetoides thermophila DSM 1495
UniProt ID:G0S1R0 Pfam ID:PF01929
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Ribosomal protein L15
Gene (Uniprot):CTHT_0002100
Chain IDs:R (auth: LN)
Chain Length:25
Number of Molecules:1
Biological Source:Thermochaetoides thermophila DSM 1495
UniProt ID:G0RZ88 Pfam ID:PF00827
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L16-like protein
Gene (Uniprot):CTHT_0068840
Chain IDs:S (auth: LO)
Chain Length:106
Number of Molecules:1
Biological Source:Thermochaetoides thermophila DSM 1495
UniProt ID:G0SH61 Pfam ID:PF00572
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein l17-like protein
Gene (Uniprot):CTHT_0067970
Chain IDs:T (auth: LP)
Chain Length:187
Number of Molecules:1
Biological Source:Thermochaetoides thermophila DSM 1495
UniProt ID:G0SGY1 Pfam ID:PF00237
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Ribosomal protein L18-like protein
Gene (Uniprot):CTHT_0045230
Chain IDs:U (auth: LQ)
Chain Length:147
Number of Molecules:1
Biological Source:Thermochaetoides thermophila DSM 1495
UniProt ID:G0S9B5 Pfam ID:PF17135
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Ribosomal protein L19
Gene (Uniprot):CTHT_0047080
Chain IDs:V (auth: LR)
Chain Length:192
Number of Molecules:1
Biological Source:Thermochaetoides thermophila DSM 1495
UniProt ID:G0S9T3 Pfam ID:PF01280
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L20
Gene (Uniprot):CTHT_0056900
Chain IDs:W (auth: LS)
Chain Length:174
Number of Molecules:1
Biological Source:Thermochaetoides thermophila DSM 1495
UniProt ID:G0SCE2 Pfam ID:PF01775
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein l21-like protein
Gene (Uniprot):CTHT_0011760
Chain IDs:X (auth: LT)
Chain Length:160
Number of Molecules:1
Biological Source:Thermochaetoides thermophila DSM 1495
UniProt ID:G0S0Z3 Pfam ID:PF01157
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L22-like protein
Gene (Uniprot):CTHT_0052850
Chain IDs:Y (auth: LU)
Chain Length:127
Number of Molecules:1
Biological Source:Thermochaetoides thermophila DSM 1495
UniProt ID:G0SDS8 Pfam ID:PF01776
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein l23-like protein
Gene (Uniprot):CTHT_0074440
Chain IDs:Z (auth: LV)
Chain Length:139
Number of Molecules:1
Biological Source:Thermochaetoides thermophila DSM 1495
UniProt ID:G0SI44 Pfam ID:PF00238
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L24-like protein
Gene (Uniprot):CTHT_0014380
Chain IDs:AA (auth: LW)
Chain Length:161
Number of Molecules:1
Biological Source:Thermochaetoides thermophila DSM 1495
UniProt ID:G0S1P9 Pfam ID:PF01246
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L25-like protein
Gene (Uniprot):CTHT_0023650
Chain IDs:BA (auth: LX)
Chain Length:156
Number of Molecules:1
Biological Source:Thermochaetoides thermophila DSM 1495
UniProt ID:G0S507 Pfam ID:PF03939, PF00276
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L26-like protein
Gene (Uniprot):CTHT_0007360
Chain IDs:CA (auth: LY)
Chain Length:138
Number of Molecules:1
Biological Source:Thermochaetoides thermophila DSM 1495
UniProt ID:G0RYN9 Pfam ID:PF16906, PF00467
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L27
Gene (Uniprot):CTHT_0002720
Chain IDs:DA (auth: LZ)
Chain Length:135
Number of Molecules:1
Biological Source:Thermochaetoides thermophila DSM 1495
UniProt ID:G0RZE9 Pfam ID:PF01777
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L28-like protein
Chain IDs:EA (auth: La)
Chain Length:149
Number of Molecules:1
Biological Source:Thermochaetoides thermophila DSM 1495
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L29
Chain IDs:FA (auth: Lb)
Chain Length:392
Number of Molecules:1
Biological Source:Thermochaetoides thermophila DSM 1495
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein l30-like protein
Gene (Uniprot):CTHT_0063820
Chain IDs:GA (auth: Lc)
Chain Length:108
Number of Molecules:1
Biological Source:Thermochaetoides thermophila DSM 1495
UniProt ID:G0SEI0 Pfam ID:PF01248
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Putative 60S ribosomal protein
Gene (Uniprot):CTHT_0059140
Chain IDs:HA (auth: Ld)
Chain Length:304
Number of Molecules:1
Biological Source:Thermochaetoides thermophila DSM 1495
UniProt ID:G0SD68 Pfam ID:PF01198
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L32-like protein
Gene (Uniprot):CTHT_0027000
Chain IDs:IA (auth: Le)
Chain Length:200
Number of Molecules:1
Biological Source:Thermochaetoides thermophila DSM 1495
UniProt ID:G0S6V4 Pfam ID:PF01655
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein l33-like protein
Gene (Uniprot):CTHT_0057640
Chain IDs:JA (auth: Lf)
Chain Length:249
Number of Molecules:1
Biological Source:Thermochaetoides thermophila DSM 1495
UniProt ID:G0SCL3 Pfam ID:PF01247
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Ribosomal protein l34-like protein
Gene (Uniprot):CTHT_0071430
Chain IDs:KA (auth: Lg)
Chain Length:119
Number of Molecules:1
Biological Source:Thermochaetoides thermophila DSM 1495
UniProt ID:G0SFN0 Pfam ID:PF01199
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Dolichyl-diphosphooligosaccharide--protein glycotransferase
Gene (Uniprot):CTHT_0009650
Chain IDs:LA (auth: Lh)
Chain Length:126
Number of Molecules:1
Biological Source:Thermochaetoides thermophila DSM 1495
UniProt ID:G0S0D7 Pfam ID:PF00831
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L36
Gene (Uniprot):CTHT_0054170
Chain IDs:MA (auth: Li)
Chain Length:219
Number of Molecules:1
Biological Source:Thermochaetoides thermophila DSM 1495
UniProt ID:G0SBN1 Pfam ID:PF01158
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Ribosomal protein L37
Gene (Uniprot):CTHT_0011850
Chain IDs:NA (auth: Lj)
Chain Length:173
Number of Molecules:1
Biological Source:Thermochaetoides thermophila DSM 1495
UniProt ID:G0S101 Pfam ID:PF01907
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L38-like protein
Gene (Uniprot):CTHT_0065470
Chain IDs:OA (auth: Lk)
Chain Length:81
Number of Molecules:1
Biological Source:Thermochaetoides thermophila DSM 1495
UniProt ID:G0SG89 Pfam ID:PF01781
Polymer Type:polypeptide(L)
Molecule:Ribosomal protein eL39
Chain IDs:PA (auth: Ll)
Chain Length:213
Number of Molecules:1
Biological Source:Thermochaetoides thermophila DSM 1495
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Putative ribosomal protein
Gene (Uniprot):CTHT_0029790
Chain IDs:QA (auth: Lm)
Chain Length:128
Number of Molecules:1
Biological Source:Thermochaetoides thermophila DSM 1495
UniProt ID:G0S8G4 Pfam ID:PF00240, PF01020
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L41-A
Gene (Uniprot):RPL41A
Chain IDs:RA (auth: Ln), VA (auth: Lr)
Chain Length:25
Number of Molecules:2
Biological Source:Thermochaetoides thermophila DSM 1495
UniProt ID:P0CX86 Pfam ID:PF05162
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L44-like protein
Gene (Uniprot):CTHT_0055350
Chain IDs:SA (auth: Lo)
Chain Length:106
Number of Molecules:1
Biological Source:Thermochaetoides thermophila DSM 1495
UniProt ID:G0SBZ6 Pfam ID:PF00935
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L43-like protein
Gene (Uniprot):CTHT_0026110
Chain IDs:TA (auth: Lp)
Chain Length:187
Number of Molecules:1
Biological Source:Thermochaetoides thermophila DSM 1495
UniProt ID:G0S6B0 Pfam ID:PF01780
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Putative 60S ribosomal protein
Gene (Uniprot):CTHT_0070250
Chain IDs:UA (auth: Lq)
Chain Length:147
Number of Molecules:1
Biological Source:Thermochaetoides thermophila DSM 1495
UniProt ID:G0SHJ6 Pfam ID:PF01778
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:60S acidic ribosomal protein P0
Gene (Uniprot):CTHT_0067070
Chain IDs:WA (auth: Ls)
Chain Length:174
Number of Molecules:1
Biological Source:Thermochaetoides thermophila DSM 1495
UniProt ID:G0SGP3 Pfam ID:PF00466, PF17777, PF00428
Polymer Type:polypeptide(L)
Molecule:Nascent chain C-terminus
Chain IDs:XA (auth: PC)
Chain Length:2
Number of Molecules:1
Biological Source:Thermochaetoides thermophila DSM 1495
Polymer Type:polypeptide(L)
Molecule:Nascent chain N-terminus
Chain IDs:YA (auth: PN)
Chain Length:6
Number of Molecules:1
Biological Source:Thermochaetoides thermophila DSM 1495
Ligand Molecules
K
MG
SPD
SPM
ZN
Primary Citation
Pseudouridine increases ribosome stability in a thermophilic eukaryote
Nucleic Acids Res. ? ? ? (2025)
DOI: 10.1093/nar/gkaf1368
Primary Citation of related structures
9I1W
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