9I1R image
Deposition Date 2025-01-16
Release Date 2025-07-02
Last Version Date 2025-07-02
Entry Detail
PDB ID:
9I1R
Keywords:
Title:
Structure of the bicylindrical allophycocyanin core expressed during far-red light photoacclimation (FaRLiP)
Biological Source:
Method Details:
Experimental Method:
Resolution:
2.51 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Phycocyanin
Gene (Uniprot):Chro_1032
Chain IDs:A, E, G, M, O, Q, T, V, X, Z (auth: a), DA (auth: e), FA (auth: g), LA (auth: m), NA (auth: o), PA (auth: q), SA (auth: t), UA (auth: v), WA (auth: x)
Chain Length:158
Number of Molecules:18
Biological Source:Chroococcidiopsis thermalis PCC 7203
Polymer Type:polypeptide(L)
Molecule:Allophycocyanin beta subunit apoprotein
Gene (Uniprot):Chro_1033
Chain IDs:B, D, F, H, L, N, P, R, U, W, Y, AA (auth: b), CA (auth: d), EA (auth: f), GA (auth: h), KA (auth: l), MA (auth: n), OA (auth: p), QA (auth: r), TA (auth: u), VA (auth: w), XA (auth: y)
Chain Length:161
Number of Molecules:22
Biological Source:Chroococcidiopsis thermalis PCC 7203
Polymer Type:polypeptide(L)
Molecule:Phycocyanin
Gene (Uniprot):Chro_1036
Chain IDs:C, BA (auth: c)
Chain Length:175
Number of Molecules:2
Biological Source:Chroococcidiopsis thermalis PCC 7203
Polymer Type:polypeptide(L)
Molecule:Phycocyanin
Gene (Uniprot):Chro_1034
Chain IDs:I, HA (auth: i)
Chain Length:159
Number of Molecules:2
Biological Source:Chroococcidiopsis thermalis PCC 7203
Polymer Type:polypeptide(L)
Molecule:Allophycocyanin beta-18 subunit apoprotein
Gene (Uniprot):Chro_1766
Chain IDs:J, IA (auth: j)
Chain Length:169
Number of Molecules:2
Biological Source:Chroococcidiopsis thermalis PCC 7203
Polymer Type:polypeptide(L)
Molecule:Phycobiliprotein ApcE
Gene (Uniprot):Chro_1035
Chain IDs:K, JA (auth: k)
Chain Length:780
Number of Molecules:2
Biological Source:Chroococcidiopsis thermalis PCC 7203
Polymer Type:polypeptide(L)
Molecule:Phycobilisome 7.8 kDa linker polypeptide, allophycocyanin-associated, core
Gene (Uniprot):Chro_4322
Chain IDs:S, RA (auth: s)
Chain Length:67
Number of Molecules:2
Biological Source:Chroococcidiopsis thermalis PCC 7203
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
MEN B ASN modified residue
Ligand Molecules
Primary Citation
Structure of a stripped-down and tuned-up far-red phycobilisome.
Commun Biol 8 907 907 (2025)
PMID: 40494956 DOI: 10.1038/s42003-025-08326-y

Abstact

A diverse subset of cyanobacteria can transiently modify their photosynthetic machinery during far-red light photoacclimation to drive photosynthesis with less energetic photons (700 nm-800 nm). To achieve this, all the main light-driven components of the photosynthetic apparatus, including their allophycocyanin antenna, are replaced with red-shifted paralogues. Recent studies based on the structure of an incomplete complex provided some insights into the tuning of the far-red phycobiliproteins. Here, we solved the structure of the intact bicylindrical allophycocyanin complex from the cyanobacterium Chroococcidiopsis thermalis PCC 7203 at a resolution of 2.51 Å determined by Cryo-electron microscopy single particle analysis. A comparison between conserved structural features in far-red and white light allophycocyanin cores provides insight on the evolutionary adaptations needed to optimize excitation energy transfer in the far-red light adapted photosynthetic apparatus. The reduction in antenna size in far-red photosynthesis suggests a need to optimize membrane packing to increase the number of photosystems and tune the ratio between chlorophyll f molecules and bilin pigments, while the wider spread in the absorption range of the bilins suggests faster and more efficient excitation energy transfer to far-red Photosystem II by limiting backflow of excitation from the reaction centres to the far-red bilin pigments.

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