9HYT image
Deposition Date 2025-01-10
Release Date 2025-10-22
Last Version Date 2025-10-29
Entry Detail
PDB ID:
9HYT
Title:
Crystal structure of the GFRaL receptor in complex with an inhibitory cyclic peptide
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.90 Å
R-Value Free:
0.24
R-Value Work:
0.19
Space Group:
C 2 2 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:GDNF family receptor alpha-like
Gene (Uniprot):GFRAL
Chain IDs:A, B, C
Chain Length:245
Number of Molecules:3
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Inhibitory cyclic peptide
Chain IDs:D, E, F
Chain Length:17
Number of Molecules:3
Biological Source:synthetic construct
Primary Citation
Design of Bicyclic Peptide Tandems Mimicking the Homodimeric GDF15 Protein to Inhibit GDF15-GFRaL-RET Complex Cell Signaling.
J.Med.Chem. ? ? ? (2025)
PMID: 41066664 DOI: 10.1021/acs.jmedchem.5c01378

Abstact

The GDF15-GFRaL-RET signaling complex is involved in a broad range of disease states, with agonistic action of GDF15 affecting metabolism and body weight control, while inhibition is indicated in cancer and wasting disorders like cachexia. Here, we describe the discovery of the peptide inhibitors of the GDF15-GFRaL protein-protein interaction to prevent RET-induced signaling using both a structure-guided design and a phage display approach. Phage display provided bicyclic peptide hits with high affinity for GFRaL, and these were dimerized to mimic the bidentate interaction of homodimeric GDF15. Guided by structural data, the monomeric peptides were converted into tandem Bicycle molecules with picomolar affinities, similar to that of the endogenous GDF15 ligand. These dimerized protein mimetics inhibited cell signaling in a functional assay and showed improved pharmacokinetic properties compared with their monomeric counterparts. This is the first example of a homodimeric Bicycle molecule inhibiting receptor complex formation, thereby antagonizing the intracellular signaling response.

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Primary Citation of related structures