9HUJ image
Deposition Date 2024-12-23
Release Date 2025-10-22
Last Version Date 2025-11-12
Entry Detail
PDB ID:
9HUJ
Keywords:
Title:
CryoEM structure of human peptidylarginine deiminase type 4 (PAD4) in complex with heparin oligomer (12 subunits)
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.57 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Protein-arginine deiminase type-4
Gene (Uniprot):PADI4
Chain IDs:A, B, C, D
Chain Length:676
Number of Molecules:4
Biological Source:Homo sapiens
Primary Citation
Glycosaminoglycans activate peptidylarginine deiminase 4 by enhancing calcium affinity.
Proc.Natl.Acad.Sci.USA 122 e2508369122 e2508369122 (2025)
PMID: 41166417 DOI: 10.1073/pnas.2508369122

Abstact

Rheumatoid arthritis is a chronic inflammatory disease driven by abnormal protein modifications. These include citrullination of arginine residues by the calcium-activated enzyme peptidylarginine deiminase 4 (PAD4). However, calcium in body fluids may not fully activate PAD4, suggesting the potential involvement of other activators. In this study, we investigated the ability of glycosaminoglycans (a class of negatively charged polysaccharides) to modulate PAD4 activity. We found that model glycosaminoglycans bind to the enzyme with a nanomolar affinity, increase its calcium sensitivity, and require enzyme dimerization for activation. These effects depend on the size and negative charge of the glycosaminoglycan, and its various natural forms activate PAD4. Thus, our findings elucidate a mechanism by which common physiological compounds modulate PAD4 activity, potentially contributing to disease etiology.

Legend

Protein

Chemical

Disease

Primary Citation of related structures
Feedback Form
Name
Email
Institute
Feedback