9HTU image
Deposition Date 2024-12-19
Release Date 2025-06-25
Last Version Date 2025-07-02
Entry Detail
PDB ID:
9HTU
Keywords:
Title:
Structure of endolysin PlyP100 catalytic domain
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.80 Å
R-Value Free:
0.18
R-Value Work:
0.15
R-Value Observed:
0.15
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:N-acetylmuramoyl-L-alanine amidase
Gene (Uniprot):LP125_088
Chain IDs:A
Chain Length:180
Number of Molecules:1
Biological Source:Listeria phage LP-125
Primary Citation
Structural and functional insights into Listeriamonocytogenes phage endolysin PlyP100: A promising food safety tool.
J.Biol.Chem. 301 110295 110295 (2025)
PMID: 40441534 DOI: 10.1016/j.jbc.2025.110295

Abstact

Listeria monocytogenes is a ubiquitous, psychrotrophic human pathogen that can cause listeriosis, a serious illness for vulnerable populations. Some foods, such as Hispanic-style fresh cheeses like queso fresco, pose a specific risk because there are no widely accepted or available methods for L. monocytogenes mitigation that are both effective and able to maintain the properties of the products. Listeria-specific bacteriophages encode endolysins that can cleave the peptidoglycan layer of L. monocytogenes cells externally, showing promise as a potential solution to this problem. PlyP100, from the GRAS Listeria phage P100, is one such endolysin that can prevent the growth of L. monocytogenes in both lab culture conditions and a miniaturized queso fresco model. In this work, we aimed to understand the structural and functional properties of PlyP100. An AlphaFold prediction suggested the presence of three separate domains (D1, D2, and D3). By solving the crystal structure of D1 and assessing various domain truncations, we present evidence that D1 is responsible for catalytic activity, D3 is sufficient for cell wall binding, and D2 is necessary for full function of the enzyme against live cells. Additionally, we performed point mutations in D1 and compared PlyP100 to proteins with similar structures, including Streptococcus pneumoniae LytA and Listeria endolysin Ply511, to understand its specific enzymatic mechanism and target strain specificity. These insights into the structure and function of PlyP100 will aid future work aiming to engineer better endolysins as safe food antimicrobials.

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