9HS8 image
Deposition Date 2024-12-18
Release Date 2025-09-03
Last Version Date 2025-09-10
Entry Detail
PDB ID:
9HS8
Title:
Cytochrome c prime beta from Methylococcus capsulatus (Bath) in complex with nitric oxide from proli NONOate
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
1.85 Å
R-Value Free:
0.17
R-Value Work:
0.15
Space Group:
P 21 3
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Cytochrome c
Gene (Uniprot):ccp
Chain IDs:A (auth: B), B (auth: A)
Chain Length:158
Number of Molecules:2
Biological Source:Methylococcus capsulatus str. Bath
Primary Citation
Time-resolved serial synchrotron and serial femtosecond crystallography of heme proteins using photocaged nitric oxide.
Iucrj 12 582 594 (2025)
PMID: 40843530 DOI: 10.1107/S2052252525006645

Abstact

Time-resolved X-ray crystallography is undergoing a renaissance due to the development of serial crystallography at synchrotron and XFEL beamlines. Crucial to such experiments are efficient and effective methods for uniformly initiating time-dependent processes within microcrystals, such as ligand binding, enzymatic reactions or signalling. A widely applicable approach is the use of photocaged substrates, where the photocage is soaked into the crystal in advance and then activated using a laser pulse to provide uniform initiation of the reaction throughout the crystal. This work characterizes photocage release of nitric oxide and binding of this ligand to two heme protein systems, cytochrome c'-β and dye-decolourizing peroxidase B using a fixed target sample delivery system. Laser parameters for photoactivation are systematically explored, and time-resolved structures over timescales ranging from 100 µs to 1.4 s using synchrotron and XFEL beamlines are described. The effective use of this photocage for time-resolved crystallography is demonstrated and appropriate illumination conditions for such experiments are determined.

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Primary Citation of related structures