9HNJ image
Deposition Date 2024-12-10
Release Date 2025-10-22
Last Version Date 2025-11-26
Entry Detail
PDB ID:
9HNJ
Keywords:
Title:
NMR solution structure of OrfM from ICESt3 of Streptococcus thermophilus
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Conformers Calculated:
100
Conformers Submitted:
10
Selection Criteria:
structures with the lowest energy
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Transfer protein
Gene (Uniprot):STHERMO_2063
Chain IDs:A
Chain Length:98
Number of Molecules:1
Biological Source:Streptococcus thermophilus
Ligand Molecules
Primary Citation
Two OB-fold proteins from a Gram-positive conjugative element engage in relaxosome assembly and DNA processing.
Nucleic Acids Res. 53 ? ? (2025)
PMID: 41242521 DOI: 10.1093/nar/gkaf1161

Abstact

Integrative and conjugative elements (ICEs) are widespread genomic islands that propagate by bacterial conjugation. ICEs often spread antibiotic resistance genes and other adaptive genes conferring evolutionary advantages to their hosts. At the initiation of conjugation, the ICE DNA is processed by the relaxase, a transesterase that recognises its origin-of-transfer. ICESt3/Tn916/ICEBs1 superfamily of ICEs is widespread in Gram-positive bacteria, and it encodes uncanonical relaxases classified within the unique MOBT family. This study elucidates the roles of OrfL and OrfM, two OB-fold proteins from ICESt3, in its conjugative transfer. We demonstrated that OrfL and OrfM form a complex and function as relaxosomal auxiliary proteins with RelSt3, the ICESt3 MOBT relaxase. Through conjugation assays, we established that they are both essential for ICESt3 conjugation. The NMR 3D structure of OrfM revealed an OB-fold protein with several flexible regions. Our results also suggest a networking role for OrfL as it was shown by BACTH to interact with both the relaxase and with the cellular PcrA helicase involved in rolling-circle replication of mobile genetic elements in Firmicutes. Our data provide a description of essential participation of OB-fold proteins in a relaxosome, contrasting with most of other known relaxosomes in both Gram-negative and Gram-positive bacteria, which primarily involve ribbon-helix-helix proteins.

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