9HM0 image
Deposition Date 2024-12-06
Release Date 2025-12-17
Last Version Date 2025-12-17
Entry Detail
PDB ID:
9HM0
Keywords:
Title:
Translational activator Aep3 in complex with mRNA and the yeast mitochondrial ribosome
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
3.00 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein bL36m
Gene (Uniprot):RTC6
Chain IDs:JA (auth: 00)
Chain Length:93
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae W303
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit protein mS38
Gene (Uniprot):QRI5
Chain IDs:A (auth: 1)
Chain Length:111
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae W303
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein mL38
Gene (Uniprot):MRPL35
Chain IDs:KA (auth: 11)
Chain Length:367
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae W303
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit protein mS41
Gene (Uniprot):FYV4
Chain IDs:B (auth: 2)
Chain Length:130
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae W303
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein mL40
Gene (Uniprot):MRPL28
Chain IDs:LA (auth: 22)
Chain Length:147
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae W303
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit protein mS42
Gene (Uniprot):RSM26
Chain IDs:C (auth: 3)
Chain Length:266
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae W303
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein mL41
Gene (Uniprot):MRPL27
Chain IDs:MA (auth: 33)
Chain Length:146
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit protein mS43
Gene (Uniprot):MRP1
Chain IDs:D (auth: 4)
Chain Length:321
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae W303
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein mL43
Gene (Uniprot):MRPL51
Chain IDs:NA (auth: 44)
Chain Length:140
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae W303
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit protein mS27
Gene (Uniprot):MRP13
Chain IDs:E (auth: 5)
Chain Length:339
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae W303
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein mL44
Gene (Uniprot):MRPL3
Chain IDs:OA (auth: 55)
Chain Length:390
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae W303
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit protein mS45
Gene (Uniprot):MRPS35
Chain IDs:F (auth: 6)
Chain Length:345
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae W303
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein mL46
Gene (Uniprot):MRPL17
Chain IDs:PA (auth: 66)
Chain Length:281
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae W303
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit protein mS46
Gene (Uniprot):RSM28
Chain IDs:G (auth: 7)
Chain Length:361
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae W303
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein mL49
Gene (Uniprot):IMG2
Chain IDs:QA (auth: 77)
Chain Length:146
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae W303
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit protein mS47
Gene (Uniprot):EHD3
Chain IDs:H (auth: 8)
Chain Length:500
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae W303
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein mL50
Gene (Uniprot):MRPL13
Chain IDs:RA (auth: 88)
Chain Length:264
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae W303
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein mL57
Gene (Uniprot):MRPL15
Chain IDs:SA (auth: 99)
Chain Length:253
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae W303
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit protein bS1m
Gene (Uniprot):MRP51
Chain IDs:I (auth: A)
Chain Length:344
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae W303
Polymer Type:polyribonucleotide
Molecule:21S mitochondrial rRNA
Chain IDs:TA (auth: AA)
Chain Length:195
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae W303
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit protein uS2m
Gene (Uniprot):MRP4
Chain IDs:J (auth: B)
Chain Length:394
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae W303
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein uL2m
Gene (Uniprot):RML2
Chain IDs:UA (auth: BB)
Chain Length:157
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae W303
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit protein uS3m
Gene (Uniprot):VAR1
Chain IDs:K (auth: C)
Chain Length:398
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae W303
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein uL3m
Gene (Uniprot):MRPL9
Chain IDs:VA (auth: CC)
Chain Length:131
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae W303
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit protein uS4m
Gene (Uniprot):NAM9
Chain IDs:L (auth: D)
Chain Length:486
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae W303
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein uL4m
Gene (Uniprot):YML6
Chain IDs:WA (auth: DD)
Chain Length:286
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae W303
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit protein uS5m
Gene (Uniprot):MRPS5
Chain IDs:M (auth: E)
Chain Length:307
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae W303
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein uL5m
Gene (Uniprot):MRPL7
Chain IDs:XA (auth: EE)
Chain Length:292
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae W303
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit protein bS6m
Gene (Uniprot):MRP17
Chain IDs:N (auth: F)
Chain Length:131
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae W303
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein uL6m
Gene (Uniprot):MRPL6
Chain IDs:YA (auth: FF)
Chain Length:214
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae W303
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit protein uS7m
Gene (Uniprot):RSM7
Chain IDs:O (auth: G)
Chain Length:247
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae W303
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein bL9m
Gene (Uniprot):MRPL50
Chain IDs:ZA (auth: GG)
Chain Length:139
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae W303
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit protein uS8m
Gene (Uniprot):MRPS8
Chain IDs:P (auth: H)
Chain Length:155
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae W303
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein uL13m
Gene (Uniprot):MRPL23
Chain IDs:AB (auth: HH)
Chain Length:163
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae W303
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit protein uS9m
Gene (Uniprot):MRPS9
Chain IDs:Q (auth: I)
Chain Length:278
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae W303
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein uL14m
Gene (Uniprot):MRPL38
Chain IDs:BB (auth: II)
Chain Length:138
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae W303
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit protein uS10m
Gene (Uniprot):RSM10
Chain IDs:R (auth: J)
Chain Length:203
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae W303
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein uL15m
Gene (Uniprot):MRPL10
Chain IDs:CB (auth: JJ)
Chain Length:322
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae W303
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit protein uS11m
Gene (Uniprot):MRPS18
Chain IDs:S (auth: K)
Chain Length:217
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae W303
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein uL16m
Gene (Uniprot):MRPL16
Chain IDs:DB (auth: KK)
Chain Length:232
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae W303
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit protein uS12m
Gene (Uniprot):MRPS12
Chain IDs:T (auth: L)
Chain Length:153
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae W303
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein bL17m
Gene (Uniprot):MRPL8
Chain IDs:EB (auth: LL)
Chain Length:238
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae W303
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit protein uS13m
Gene (Uniprot):SWS2
Chain IDs:U (auth: M)
Chain Length:143
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae W303
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein bL19m
Gene (Uniprot):IMG1
Chain IDs:FB (auth: MM)
Chain Length:169
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae W303
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit protein uS14m
Gene (Uniprot):MRP2
Chain IDs:V (auth: N)
Chain Length:115
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae W303
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein bL21m
Gene (Uniprot):MRPL49
Chain IDs:GB (auth: NN)
Chain Length:161
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae W303
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit protein uS15m
Gene (Uniprot):MRPS28
Chain IDs:W (auth: O)
Chain Length:286
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae W303
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein uL22m
Gene (Uniprot):MRPL22
Chain IDs:HB (auth: OO)
Chain Length:309
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae W303
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit protein bS16m
Gene (Uniprot):MRPS16
Chain IDs:X (auth: P)
Chain Length:121
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae W303
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein uL23m
Chain IDs:IB (auth: PP)
Chain Length:263
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae W303
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit protein uS17m
Gene (Uniprot):MRPS17
Chain IDs:Y (auth: Q)
Chain Length:237
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae W303
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein uL24m
Gene (Uniprot):MRPL40
Chain IDs:JB (auth: QQ)
Chain Length:297
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae W303
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit protein bS18m
Gene (Uniprot):RSM18
Chain IDs:Z (auth: R)
Chain Length:1649
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae W303
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein bL27m
Gene (Uniprot):MRP7
Chain IDs:KB (auth: RR)
Chain Length:371
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae W303
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit protein uS19m
Gene (Uniprot):RSM19
Chain IDs:AA (auth: S)
Chain Length:91
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae W303
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein bL28m
Gene (Uniprot):MRPL24
Chain IDs:LB (auth: SS)
Chain Length:258
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae W303
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit protein bS21m
Gene (Uniprot):MRP21
Chain IDs:BA (auth: T)
Chain Length:177
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae W303
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein uL29m
Gene (Uniprot):MRPL4
Chain IDs:MB (auth: TT)
Chain Length:319
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae W303
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit protein mS23
Gene (Uniprot):RSM25
Chain IDs:CA (auth: U)
Chain Length:264
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae W303
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein uL30m
Gene (Uniprot):MRPL33
Chain IDs:NB (auth: UU)
Chain Length:86
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae W303
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit protein mS26
Gene (Uniprot):PET123
Chain IDs:OB (auth: V)
Chain Length:318
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae W303
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein bL31m
Gene (Uniprot):MRPL36
Chain IDs:PB (auth: VV)
Chain Length:177
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae W303
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit protein mS29
Gene (Uniprot):RSM23
Chain IDs:DA (auth: W)
Chain Length:450
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae W303
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein bL32m
Gene (Uniprot):MRPL32
Chain IDs:QB (auth: WW)
Chain Length:183
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae W303
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit protein mS33
Gene (Uniprot):RSM27
Chain IDs:EA (auth: X)
Chain Length:110
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae W303
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein bL33m
Gene (Uniprot):MRPL39
Chain IDs:RB (auth: XX)
Chain Length:70
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae W303
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit protein mS35
Gene (Uniprot):RSM24
Chain IDs:FA (auth: Y)
Chain Length:319
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae W303
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein bL34m
Gene (Uniprot):YD9727.10
Chain IDs:SB (auth: YY)
Chain Length:105
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae W303
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit protein mS37
Gene (Uniprot):MRP10
Chain IDs:GA (auth: Z)
Chain Length:95
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae W303
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein bL35m
Gene (Uniprot):MRP35
Chain IDs:TB (auth: ZZ)
Chain Length:115
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae W303
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:ATPase expression protein 3
Gene (Uniprot):AEP3
Chain IDs:HA (auth: a)
Chain Length:344
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae W303
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein mL58
Gene (Uniprot):MRPL20
Chain IDs:UB (auth: aa)
Chain Length:195
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae W303
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein mL59
Gene (Uniprot):MRPL25
Chain IDs:VB (auth: bb)
Chain Length:157
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae W303
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein mL60
Gene (Uniprot):MRPL31
Chain IDs:WB (auth: cc)
Chain Length:131
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae W303
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein mL67
Gene (Uniprot):MHR1
Chain IDs:XB (auth: dd)
Chain Length:286
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae W303
Polymer Type:polyribonucleotide
Molecule:15S mitochondrial rRNA
Chain IDs:YB (auth: r)
Chain Length:1649
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae W303
Polymer Type:polyribonucleotide
Molecule:E/E-site formyl-methionine tRNA
Chain IDs:IA (auth: t)
Chain Length:177
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae W303
Primary Citation
Translational activators align mRNAs at the small mitoribosomal subunit for translation initiation.
Nat.Struct.Mol.Biol. ? ? ? (2025)
PMID: 41339860 DOI: 10.1038/s41594-025-01726-y
Primary Citation of related structures
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