ISDA: 9HLZ

Deposition Date 2024-12-06

Release Date 2025-12-17

Last Version Date 2025-12-17

Entry Detail

PDB ID:

9HLZ

Keywords:

RIBOSOME

Title:

Translational activators Aep1, Aep2 and Atp25 in complex with mRNA and the yeast mitochondrial ribosome

Biological Source:

Source Organism:

Saccharomyces cerevisiae W303 (Taxon ID: 580240)

Method Details:

Experimental Method:

ELECTRON MICROSCOPY

Resolution:

3.20 Å

Aggregation State:

PARTICLE

Reconstruction Method:

SINGLE PARTICLE

Download Validation Report

Macromolecular Entities

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein bL36m
Gene (Uniprot):RTC6
Chain IDs:LA (auth: 00)
Chain Length:93
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae W303

UniProt ID:O14464 Pfam ID:PF00444

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit protein mS38
Gene (Uniprot):QRI5
Chain IDs:A (auth: 1)
Chain Length:111
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae W303

UniProt ID:P32344 Pfam ID:PF08213

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein mL38
Gene (Uniprot):MRPL35
Chain IDs:MA (auth: 11)
Chain Length:367
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae W303

UniProt ID:Q06678 Pfam ID:PF01161

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit protein mS41
Gene (Uniprot):FYV4
Chain IDs:B (auth: 2)
Chain Length:130
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae W303

UniProt ID:P38783 Pfam ID:PF09597

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein mL40
Gene (Uniprot):MRPL28
Chain IDs:NA (auth: 22)
Chain Length:147
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae W303

UniProt ID:P36527 Pfam ID:PF09812

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit protein mS42
Gene (Uniprot):RSM26
Chain IDs:C (auth: 3)
Chain Length:266
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae W303

UniProt ID:P47141 Pfam ID:PF02777

Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein mL41
Chain IDs:OA (auth: 33)
Chain Length:146
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae W303

Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit protein mS43
Chain IDs:D (auth: 4)
Chain Length:321
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae W303

Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein mL43
Chain IDs:PA (auth: 44)
Chain Length:140
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae W303

Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit protein mS44
Chain IDs:E (auth: 5)
Chain Length:339
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae W303

Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein mL44
Chain IDs:QA (auth: 55)
Chain Length:390
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae W303

Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit protein mS45
Chain IDs:F (auth: 6)
Chain Length:345
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae W303

Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein mL46
Chain IDs:RA (auth: 66)
Chain Length:281
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae W303

Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit protein mS46
Chain IDs:G (auth: 7)
Chain Length:361
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae W303

Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein mL49
Chain IDs:SA (auth: 77)
Chain Length:146
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae W303

Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit protein mS47
Chain IDs:H (auth: 8)
Chain Length:500
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae W303

Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein mL50
Chain IDs:TA (auth: 88)
Chain Length:264
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae W303

Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein mL57
Chain IDs:UA (auth: 99)
Chain Length:253
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae W303

Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit protein bS1m
Chain IDs:I (auth: A)
Chain Length:518
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae W303

Polymer Type:polyribonucleotide
Molecule:21S mitochondrial rRNA
Chain IDs:VA (auth: AA)
Chain Length:3296
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae W303

Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit protein uS2m
Chain IDs:J (auth: B)
Chain Length:394
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae W303

Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein uL2m
Chain IDs:WA (auth: BB)
Chain Length:393
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae W303

Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit protein uS3m
Chain IDs:K (auth: C)
Chain Length:398
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae W303

Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein uL3m
Chain IDs:XA (auth: CC)
Chain Length:131
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae W303

Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit protein uS4m
Chain IDs:L (auth: D)
Chain Length:486
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae W303

Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein uL4m
Chain IDs:YA (auth: DD)
Chain Length:286
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae W303

Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit protein uS5m
Chain IDs:M (auth: E)
Chain Length:307
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae W303

Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein uL5m
Chain IDs:ZA (auth: EE)
Chain Length:292
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae W303

Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit protein bS6m
Chain IDs:N (auth: F)
Chain Length:131
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae W303

Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein uL6m
Chain IDs:AB (auth: FF)
Chain Length:214
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae W303

Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit protein uS7m
Chain IDs:O (auth: G)
Chain Length:247
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae W303

Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein bL9m
Chain IDs:BB (auth: GG)
Chain Length:139
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae W303

Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit protein uS8m
Chain IDs:P (auth: H)
Chain Length:155
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae W303

Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein uL13m
Chain IDs:CB (auth: HH)
Chain Length:163
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae W303

Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit protein uS9m
Chain IDs:Q (auth: I)
Chain Length:278
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae W303

Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein uL14m
Chain IDs:DB (auth: II)
Chain Length:138
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae W303

Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit protein uS10m
Chain IDs:R (auth: J)
Chain Length:203
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae W303

Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein uL15m
Chain IDs:EB (auth: JJ)
Chain Length:322
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae W303

Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit protein uS11m
Chain IDs:S (auth: K)
Chain Length:217
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae W303

Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein uL16m
Chain IDs:FB (auth: KK)
Chain Length:232
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae W303

Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit protein uS12m
Chain IDs:T (auth: L)
Chain Length:153
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae W303

Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein bL17m
Chain IDs:GB (auth: LL)
Chain Length:238
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae W303

Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit protein uS13m
Chain IDs:U (auth: M)
Chain Length:143
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae W303

Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein bL19m
Chain IDs:HB (auth: MM)
Chain Length:169
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae W303

Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit protein uS14m
Chain IDs:V (auth: N)
Chain Length:115
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae W303

Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein bL21m
Chain IDs:IB (auth: NN)
Chain Length:161
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae W303

Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit protein uS15m
Chain IDs:W (auth: O)
Chain Length:286
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae W303

Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein uL22m
Chain IDs:JB (auth: OO)
Chain Length:309
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae W303

Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit protein bS16m
Chain IDs:X (auth: P)
Chain Length:121
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae W303

Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein uL23m
Chain IDs:KB (auth: PP)
Chain Length:263
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae W303

Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit protein uS17m
Chain IDs:Y (auth: Q)
Chain Length:237
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae W303

Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein uL24m
Chain IDs:LB (auth: QQ)
Chain Length:297
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae W303

Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit protein bS18m
Chain IDs:Z (auth: R)
Chain Length:138
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae W303

Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein bL27m
Chain IDs:MB (auth: RR)
Chain Length:371
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae W303

Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit protein uS19m
Chain IDs:AA (auth: S)
Chain Length:91
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae W303

Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein bL28m
Chain IDs:NB (auth: SS)
Chain Length:258
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae W303

Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit protein bS21m
Chain IDs:BA (auth: T)
Chain Length:76
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae W303

Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein uL29m
Chain IDs:OB (auth: TT)
Chain Length:319
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae W303

Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit protein mS23
Chain IDs:CA (auth: U)
Chain Length:264
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae W303

Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein uL30m
Chain IDs:PB (auth: UU)
Chain Length:86
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae W303

Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit protein mS26
Chain IDs:QB (auth: V)
Chain Length:318
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae W303

Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein bL31m
Chain IDs:RB (auth: VV)
Chain Length:177
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae W303

Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit protein mS29
Chain IDs:DA (auth: W)
Chain Length:450
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae W303

Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein bL32m
Chain IDs:SB (auth: WW)
Chain Length:183
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae W303

Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit protein mS33
Chain IDs:EA (auth: X)
Chain Length:110
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae W303

Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein bL33m
Chain IDs:TB (auth: XX)
Chain Length:70
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae W303

Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit protein mS35
Chain IDs:FA (auth: Y)
Chain Length:319
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae W303

Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein bL34m
Chain IDs:UB (auth: YY)
Chain Length:105
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae W303

Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit protein mS37
Chain IDs:GA (auth: Z)
Chain Length:95
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae W303

Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein bL35m
Chain IDs:VB (auth: ZZ)
Chain Length:115
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae W303

Polymer Type:polypeptide(L)
Molecule:ATPase expression protein 1
Chain IDs:HA (auth: a)
Chain Length:518
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae W303

Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein mL58
Chain IDs:WB (auth: aa)
Chain Length:3296
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae W303

Polymer Type:polypeptide(L)
Molecule:ATPase expression protein 2
Chain IDs:IA (auth: b)
Chain Length:394
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae W303

Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein mL59
Chain IDs:XB (auth: bb)
Chain Length:393
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae W303

Polymer Type:polypeptide(L)
Molecule:ATPase synthesis protein 25, mitochondrial
Chain IDs:JA (auth: c)
Chain Length:398
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae W303

Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein mL60
Chain IDs:YB (auth: cc)
Chain Length:131
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae W303

Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein mL67
Chain IDs:ZB (auth: dd)
Chain Length:286
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae W303

Polymer Type:polyribonucleotide
Molecule:15S mitochondrial rRNA
Chain IDs:AC (auth: r)
Chain Length:138
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae W303

Polymer Type:polyribonucleotide
Molecule:E/E-site formyl-methionine tRNA
Chain IDs:KA (auth: t)
Chain Length:76
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae W303

Ligand Molecules