9HL9 image
Deposition Date 2024-12-04
Release Date 2025-10-15
Last Version Date 2025-11-19
Entry Detail
PDB ID:
9HL9
Keywords:
RIBOSOME
Title:
CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH P/E-site tRNA AND mRNA : LM14Cs1H3 sKO STRAIN
Biological Source:
Source Organism:
Leishmania major strain Friedlin (Taxon ID: 347515)
Method Details:
Experimental Method:
ELECTRON MICROSCOPY
Resolution:
2.50 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
9HL9 validation report
Macromolecular Entities
Polymer Type:polyribonucleotide
Molecule:LSUa_rRNA
Chain IDs:A (auth: L1)
Chain Length:1782
Number of Molecules:1
Biological Source:Leishmania major strain Friedlin
Polymer Type:polyribonucleotide
Molecule:LSUb_rRNA
Chain IDs:B (auth: L2)
Chain Length:1526
Number of Molecules:1
Biological Source:Leishmania major strain Friedlin
Polymer Type:polyribonucleotide
Molecule:SR1_rRNA
Chain IDs:C (auth: L3)
Chain Length:216
Number of Molecules:1
Biological Source:Leishmania major strain Friedlin
Polymer Type:polyribonucleotide
Molecule:SR2_rRNA
Chain IDs:D (auth: L4)
Chain Length:184
Number of Molecules:1
Biological Source:Leishmania major strain Friedlin
Polymer Type:polyribonucleotide
Molecule:SR4_rRNA
Chain IDs:E (auth: L5)
Chain Length:135
Number of Molecules:1
Biological Source:Leishmania major strain Friedlin
Polymer Type:polyribonucleotide
Molecule:SR6_rRNA
Chain IDs:F (auth: L6)
Chain Length:73
Number of Molecules:1
Biological Source:Leishmania major strain Friedlin
Polymer Type:polyribonucleotide
Molecule:5.8S_rRNA
Chain IDs:G (auth: L7)
Chain Length:171
Number of Molecules:1
Biological Source:Leishmania major strain Friedlin
Polymer Type:polyribonucleotide
Molecule:5S_rRNA
Chain IDs:H (auth: L8)
Chain Length:124
Number of Molecules:1
Biological Source:Leishmania major strain Friedlin
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Putative 60S ribosomal protein L2
Gene (Uniprot):LMJF_32_3900, LMJF_35_1430, LMJF_35_1440
Chain IDs:I (auth: LA)
Chain Length:260
Number of Molecules:1
Biological Source:Leishmania major strain Friedlin
UniProt ID:Q4FWX5 Pfam ID:PF00181, PF03947
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Putative ribosomal protein L3
Gene (Uniprot):LMJF_32_3130, LMJF_34_2870, LMJF_34_2880, LMJF_34_2890, LMJF_34_2900
Chain IDs:J (auth: LB)
Chain Length:70
Number of Molecules:1
Biological Source:Leishmania major strain Friedlin
UniProt ID:Q4Q2Q6 Pfam ID:PF00297
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Putative ribosomal protein L1a
Gene (Uniprot):LMJF_29_1070, LMJF_29_1090
Chain IDs:K (auth: LC)
Chain Length:252
Number of Molecules:1
Biological Source:Leishmania major strain Friedlin
UniProt ID:E9ADW5 Pfam ID:PF00573, PF14374
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L11
Gene (Uniprot):RPL11
Chain IDs:L (auth: LD)
Chain Length:104
Number of Molecules:1
Biological Source:Leishmania major strain Friedlin
UniProt ID:P48157 Pfam ID:PF00281, PF00673
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Putative 60S ribosomal protein L9
Gene (Uniprot):LMJF_21_1050
Chain IDs:M (auth: LE)
Chain Length:190
Number of Molecules:1
Biological Source:Leishmania major strain Friedlin
UniProt ID:Q4QC91 Pfam ID:PF00347
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Putative 60S ribosomal protein L6
Gene (Uniprot):LMJF_33_0720
Chain IDs:N (auth: LF)
Chain Length:195
Number of Molecules:1
Biological Source:Leishmania major strain Friedlin
UniProt ID:Q4Q4D3 Pfam ID:PF01159
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L7a
Gene (Uniprot):LMJF_07_0500, LMJF_07_0510
Chain IDs:O (auth: LG)
Chain Length:144
Number of Molecules:1
Biological Source:Leishmania major strain Friedlin
UniProt ID:Q4QIP1 Pfam ID:PF01248
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Putative 60S ribosomal protein L13a
Gene (Uniprot):LMJF_15_0200
Chain IDs:P (auth: LH)
Chain Length:168
Number of Molecules:1
Biological Source:Leishmania major strain Friedlin
UniProt ID:Q4QFG2 Pfam ID:PF00572
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Putative 60S ribosomal protein L13
Gene (Uniprot):LMJF_29_2460
Chain IDs:Q (auth: LI)
Chain Length:105
Number of Molecules:1
Biological Source:Leishmania major strain Friedlin
UniProt ID:E9AEA8 Pfam ID:PF01294
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Putative 60S ribosomal protein L23
Gene (Uniprot):LMJF_35_3790, LMJF_35_3800
Chain IDs:R (auth: LJ)
Chain Length:139
Number of Molecules:1
Biological Source:Leishmania major strain Friedlin
UniProt ID:E9AFK3 Pfam ID:PF00238
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Putative 40S ribosomal protein L14
Gene (Uniprot):LMJF_22_1520, LMJF_22_1560
Chain IDs:S (auth: LK)
Chain Length:175
Number of Molecules:1
Biological Source:Leishmania major strain Friedlin
UniProt ID:Q4QBJ1 Pfam ID:PF00467, PF01929
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Putative 60S ribosomal protein L27A/L29
Gene (Uniprot):LMJF_35_3760, LMJF_35_3780
Chain IDs:T (auth: LL)
Chain Length:145
Number of Molecules:1
Biological Source:Leishmania major strain Friedlin
UniProt ID:E9AFK0 Pfam ID:PF00828
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Ribosomal protein L15
Gene (Uniprot):LMJF_30_3650
Chain IDs:U (auth: LM)
Chain Length:128
Number of Molecules:1
Biological Source:Leishmania major strain Friedlin
UniProt ID:Q4Q6S3 Pfam ID:PF00827
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Putative 60S ribosomal protein L10
Gene (Uniprot):LMJF_04_0750, LMJF_04_0950
Chain IDs:V (auth: LN)
Chain Length:213
Number of Molecules:1
Biological Source:Leishmania major strain Friedlin
UniProt ID:O97213 Pfam ID:PF00252
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Putative 60S ribosomal protein L5
Gene (Uniprot):LMJF_35_1880, LMJF_35_1900
Chain IDs:W (auth: LO)
Chain Length:305
Number of Molecules:1
Biological Source:Leishmania major strain Friedlin
UniProt ID:E9AF09 Pfam ID:PF17144, PF14204
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L18
Gene (Uniprot):RPL18-A, RPL18-B
Chain IDs:X (auth: LP)
Chain Length:198
Number of Molecules:1
Biological Source:Leishmania major strain Friedlin
UniProt ID:Q4QG98 Pfam ID:PF17135
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Putative 60S ribosomal protein L19
Gene (Uniprot):LMJF_06_0415
Chain IDs:Y (auth: LQ)
Chain Length:254
Number of Molecules:1
Biological Source:Leishmania major strain Friedlin
UniProt ID:Q4QJ37 Pfam ID:PF01280
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L18a
Gene (Uniprot):LMJF_32_0880, LMJF_35_0600
Chain IDs:Z (auth: LR)
Chain Length:179
Number of Molecules:1
Biological Source:Leishmania major strain Friedlin
UniProt ID:Q4Q5J4 Pfam ID:PF01775
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Putative 60S ribosomal protein L21
Gene (Uniprot):LMJF_16_0460
Chain IDs:AA (auth: LS)
Chain Length:159
Number of Molecules:1
Biological Source:Leishmania major strain Friedlin
UniProt ID:Q4QEX4 Pfam ID:PF01157
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Putative 60S ribosomal protein L17
Gene (Uniprot):LMJF_24_0040
Chain IDs:BA (auth: LT)
Chain Length:166
Number of Molecules:1
Biological Source:Leishmania major strain Friedlin
UniProt ID:Q4QAX6 Pfam ID:PF00237
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Putative 60S ribosomal protein L22
Gene (Uniprot):LMJF_36_3270, LMJF_36_4420
Chain IDs:CA (auth: LU)
Chain Length:129
Number of Molecules:1
Biological Source:Leishmania major strain Friedlin
UniProt ID:Q4Q0X2 Pfam ID:PF01776
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Putative 60S ribosomal protein L23a
Gene (Uniprot):LMJF_06_0570, LMJF_06_0580
Chain IDs:DA (auth: LV)
Chain Length:145
Number of Molecules:1
Biological Source:Leishmania major strain Friedlin
UniProt ID:Q4QJ20 Pfam ID:PF00276
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Putative 60S ribosomal protein L26
Gene (Uniprot):LMJF_24_2050, LMJF_35_1670
Chain IDs:EA (auth: LW)
Chain Length:143
Number of Molecules:1
Biological Source:Leishmania major strain Friedlin
UniProt ID:Q4QAC5 Pfam ID:PF16906, PF00467
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Putative ribosomal protein L24
Gene (Uniprot):LMJF_36_1070, LMJF_36_1100
Chain IDs:FA (auth: LX)
Chain Length:124
Number of Molecules:1
Biological Source:Leishmania major strain Friedlin
UniProt ID:Q4Q1W6 Pfam ID:PF01246
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L27
Gene (Uniprot):LMJF_32_2690, LMJF_32_2710
Chain IDs:GA (auth: LY)
Chain Length:134
Number of Molecules:1
Biological Source:Leishmania major strain Friedlin
UniProt ID:Q4Q504 Pfam ID:PF00467, PF01777
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Putative 60S ribosomal protein L28
Gene (Uniprot):LMJF_11_1110, LMJF_11_1130
Chain IDs:HA (auth: LZ)
Chain Length:147
Number of Molecules:1
Biological Source:Leishmania major strain Friedlin
UniProt ID:Q4QGW7 Pfam ID:PF01778
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Putative 60S ribosomal protein L35
Gene (Uniprot):LMJF_26_2330, LMJF_26_2340
Chain IDs:IA (auth: La)
Chain Length:260
Number of Molecules:1
Biological Source:Leishmania major strain Friedlin
UniProt ID:Q4Q8V7 Pfam ID:PF00831
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L29
Gene (Uniprot):LMJF_36_3390, LMJF_36_3400
Chain IDs:JA (auth: Lb)
Chain Length:70
Number of Molecules:1
Biological Source:Leishmania major strain Friedlin
UniProt ID:Q4Q178 Pfam ID:PF01779
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Putative 60S ribosomal protein L7
Gene (Uniprot):LMJF_26_0170, LMJF_26_0180
Chain IDs:KA (auth: Lc)
Chain Length:252
Number of Molecules:1
Biological Source:Leishmania major strain Friedlin
UniProt ID:Q4Q9H4 Pfam ID:PF08079, PF00327
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L30
Gene (Uniprot):LMJF_35_0240
Chain IDs:LA (auth: Ld)
Chain Length:104
Number of Molecules:1
Biological Source:Leishmania major strain Friedlin
UniProt ID:E9AEK1 Pfam ID:PF01248
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Putative 60S ribosomal subunit protein L31
Gene (Uniprot):LMJF_35_3280, LMJF_35_3290
Chain IDs:MA (auth: Le)
Chain Length:190
Number of Molecules:1
Biological Source:Leishmania major strain Friedlin
UniProt ID:E9AFF2 Pfam ID:PF01198
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L32
Gene (Uniprot):RPL32
Chain IDs:NA (auth: Lf)
Chain Length:195
Number of Molecules:1
Biological Source:Leishmania major strain Friedlin
UniProt ID:Q4QC11 Pfam ID:PF01655
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Putative ribosomal protein l35a
Gene (Uniprot):LMJF_10_0070, LMJF_34_2470
Chain IDs:OA (auth: Lg)
Chain Length:144
Number of Molecules:1
Biological Source:Leishmania major strain Friedlin
UniProt ID:Q4QHL3 Pfam ID:PF01247
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Putative 60S ribosomal protein L34
Gene (Uniprot):LMJF_18_1400
Chain IDs:PA (auth: Lh)
Chain Length:168
Number of Molecules:1
Biological Source:Leishmania major strain Friedlin
UniProt ID:Q4QDP9 Pfam ID:PF01199
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Putative 60S Ribosomal protein L36
Gene (Uniprot):LMJF_21_0730
Chain IDs:QA (auth: Li)
Chain Length:105
Number of Molecules:1
Biological Source:Leishmania major strain Friedlin
UniProt ID:Q4QCE1 Pfam ID:PF01158
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Ribosomal protein L37
Gene (Uniprot):LMJF_33_1955
Chain IDs:RA (auth: Lj)
Chain Length:139
Number of Molecules:1
Biological Source:Leishmania major strain Friedlin
UniProt ID:E9AEH2 Pfam ID:PF01907
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Putative ribosomal protein L38
Gene (Uniprot):LMJF_03_0250, LMJF_26_2220
Chain IDs:SA (auth: Lk)
Chain Length:175
Number of Molecules:1
Biological Source:Leishmania major strain Friedlin
UniProt ID:Q4Q8X0 Pfam ID:PF01781
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Putative 60S ribosomal protein L39
Gene (Uniprot):LMJF_16_1170, LMJF_29_2370
Chain IDs:TA (auth: Ll)
Chain Length:145
Number of Molecules:1
Biological Source:Leishmania major strain Friedlin
UniProt ID:Q4QEQ0 Pfam ID:PF00832
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Ubiquitin-60S ribosomal protein L40
Gene (Uniprot):UB-EP52, LmjF31.2030, LmjF_31_2030
Chain IDs:UA (auth: Lm)
Chain Length:128
Number of Molecules:1
Biological Source:Leishmania major strain Friedlin
UniProt ID:P69201 Pfam ID:PF00240, PF01020
Polymer Type:polypeptide(L)
Molecule:Putative 60S ribosomal protein L41
Chain IDs:VA (auth: Ln)
Chain Length:213
Number of Molecules:1
Biological Source:Leishmania major strain Friedlin
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L37a
Gene (Uniprot):LMJF_21_1820, LMJF_36_1925
Chain IDs:WA (auth: Lo)
Chain Length:305
Number of Molecules:1
Biological Source:Leishmania major strain Friedlin
UniProt ID:Q4QC01 Pfam ID:PF01780
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Putative 60S ribosomal protein L44
Gene (Uniprot):LMJF_13_1670, LMJF_33_3230
Chain IDs:XA (auth: Lp)
Chain Length:198
Number of Molecules:1
Biological Source:Leishmania major strain Friedlin
UniProt ID:Q4Q3L3 Pfam ID:PF00935
Polymer Type:polyribonucleotide
Molecule:SSU_rRNA
Chain IDs:JC (auth: S1)
Chain Length:2204
Number of Molecules:1
Biological Source:Leishmania major strain Friedlin
Polymer Type:polyribonucleotide
Molecule:P-site_tRNA
Chain IDs:YA (auth: S3)
Chain Length:78
Number of Molecules:1
Biological Source:Leishmania major strain Friedlin
Polymer Type:polyribonucleotide
Molecule:E-site_tRNA
Chain IDs:ZA (auth: S4)
Chain Length:76
Number of Molecules:1
Biological Source:Leishmania major strain Friedlin
Polymer Type:polyribonucleotide
Molecule:mRNA
Chain IDs:AB (auth: S5)
Chain Length:13
Number of Molecules:1
Biological Source:Leishmania major strain Friedlin
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit protein eS1
Gene (Uniprot):LmjF.35.0400, LmjF.35.0410, LmjF.35.0420
Chain IDs:BB (auth: SA)
Chain Length:120
Number of Molecules:1
Biological Source:Leishmania major strain Friedlin
UniProt ID:Q4FX73 Pfam ID:PF01015
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein SA
Gene (Uniprot):LmjF36.5010, LmjF_36_5010, LmjF36.5120, LmjF_36_5120
Chain IDs:CB (auth: SB)
Chain Length:112
Number of Molecules:1
Biological Source:Leishmania major strain Friedlin
UniProt ID:Q4Q0Q0 Pfam ID:PF00318
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Putative 40S ribosomal protein S3
Gene (Uniprot):LMJF_15_0950, LMJF_33_0920
Chain IDs:DB (auth: SC)
Chain Length:219
Number of Molecules:1
Biological Source:Leishmania major strain Friedlin
UniProt ID:Q4Q4A0 Pfam ID:PF07650, PF00189
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Putative 40S ribosomal protein S9
Gene (Uniprot):LMJF_07_0680
Chain IDs:EB (auth: SD)
Chain Length:87
Number of Molecules:1
Biological Source:Leishmania major strain Friedlin
UniProt ID:Q4QIM3 Pfam ID:PF00163, PF01479
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S4
Gene (Uniprot):RS4
Chain IDs:FB (auth: SE)
Chain Length:273
Number of Molecules:1
Biological Source:Leishmania major strain Friedlin
UniProt ID:Q4QG31 Pfam ID:PF08071, PF01479, PF00900, PF00467, PF16121
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S2
Gene (Uniprot):LMJF_19_0060
Chain IDs:GB (auth: SF)
Chain Length:265
Number of Molecules:1
Biological Source:Leishmania major strain Friedlin
UniProt ID:Q4QDL5 Pfam ID:PF00333, PF03719
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S6
Gene (Uniprot):RPS6
Chain IDs:HB (auth: SG)
Chain Length:249
Number of Molecules:1
Biological Source:Leishmania major strain Friedlin
UniProt ID:Q9NE83 Pfam ID:PF01092
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S5
Gene (Uniprot):LMJF_11_0960, LMJF_11_0970
Chain IDs:IB (auth: SH)
Chain Length:235
Number of Molecules:1
Biological Source:Leishmania major strain Friedlin
UniProt ID:Q868B1 Pfam ID:PF00177
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S7
Gene (Uniprot):LMJF_01_0410, LMJF_01_0420
Chain IDs:JB (auth: SI)
Chain Length:200
Number of Molecules:1
Biological Source:Leishmania major strain Friedlin
UniProt ID:E9AC32 Pfam ID:PF01251
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Putative 40S ribosomal protein S15A
Gene (Uniprot):LMJF_11_1190, LMJF_29_1800
Chain IDs:KB (auth: SJ)
Chain Length:130
Number of Molecules:1
Biological Source:Leishmania major strain Friedlin
UniProt ID:Q4QGW3 Pfam ID:PF00410
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S8
Gene (Uniprot):RPS8A, RPS8B
Chain IDs:LB (auth: SK)
Chain Length:220
Number of Molecules:1
Biological Source:Leishmania major strain Friedlin
UniProt ID:P25204 Pfam ID:PF01201
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Putative 40S ribosomal protein S16
Gene (Uniprot):LMJF_26_0880, LMJF_26_0890
Chain IDs:MB (auth: SL)
Chain Length:149
Number of Molecules:1
Biological Source:Leishmania major strain Friedlin
UniProt ID:Q4Q9A5 Pfam ID:PF00380
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Putative ribosomal protein S20
Gene (Uniprot):LMJF_28_1010, LMJF_28_1030
Chain IDs:NB (auth: SM)
Chain Length:116
Number of Molecules:1
Biological Source:Leishmania major strain Friedlin
UniProt ID:Q4Q8G4 Pfam ID:PF00338
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Putative 40S ribosomal protein S10
Gene (Uniprot):LMJF_36_0980, LMJF_36_0990
Chain IDs:OB (auth: SN)
Chain Length:168
Number of Molecules:1
Biological Source:Leishmania major strain Friedlin
UniProt ID:Q4Q1X7 Pfam ID:PF03501
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S14
Gene (Uniprot):LMJF_28_0960
Chain IDs:PB (auth: SO)
Chain Length:144
Number of Molecules:1
Biological Source:Leishmania major strain Friedlin
UniProt ID:Q4Q8H1 Pfam ID:PF00411
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Putative 40S ribosomal protein S23
Gene (Uniprot):LMJF_21_1060, LMJF_21_1070
Chain IDs:QB (auth: SP)
Chain Length:143
Number of Molecules:1
Biological Source:Leishmania major strain Friedlin
UniProt ID:Q4QC89 Pfam ID:PF00164
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S12
Gene (Uniprot):LMJF_13_0570
Chain IDs:RB (auth: SQ)
Chain Length:141
Number of Molecules:1
Biological Source:Leishmania major strain Friedlin
UniProt ID:Q4QG97 Pfam ID:PF01248
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Putative 40S ribosomal protein S18
Gene (Uniprot):LMJF_36_0930
Chain IDs:SB (auth: SR)
Chain Length:153
Number of Molecules:1
Biological Source:Leishmania major strain Friedlin
UniProt ID:Q4Q1Y3 Pfam ID:PF00416
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Putative ribosomal protein S29
Gene (Uniprot):LMJF_28_2205, LMJF_28_2460
Chain IDs:TB (auth: SS)
Chain Length:57
Number of Molecules:1
Biological Source:Leishmania major strain Friedlin
UniProt ID:Q4Q817 Pfam ID:PF00253
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Putative 40S ribosomal protein S13
Gene (Uniprot):LMJF_19_0390, LMJF_33_3150
Chain IDs:UB (auth: ST)
Chain Length:151
Number of Molecules:1
Biological Source:Leishmania major strain Friedlin
UniProt ID:Q4Q3M1 Pfam ID:PF08069, PF00312
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Ribosomal protein S17 family protein
Gene (Uniprot):CGC20_22060, CGC20_31305, CGC21_29060, CGC21_34525
Chain IDs:VB (auth: SU)
Chain Length:173
Number of Molecules:1
Biological Source:Leishmania major strain Friedlin
UniProt ID:A0A504XM54 Pfam ID:PF16205, PF00366
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Putative 40S ribosomal protein S17
Gene (Uniprot):LMJF_28_2555, LMJF_28_2560
Chain IDs:WB (auth: SV)
Chain Length:143
Number of Molecules:1
Biological Source:Leishmania major strain Friedlin
UniProt ID:Q4Q806 Pfam ID:PF00833
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Putative 40S ribosomal protein S15
Gene (Uniprot):LMJF_22_0420, LMJF_22_0460
Chain IDs:XB (auth: SW)
Chain Length:152
Number of Molecules:1
Biological Source:Leishmania major strain Friedlin
UniProt ID:Q4QBV0 Pfam ID:PF00203
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S19-like protein
Gene (Uniprot):LMJF_29_2860
Chain IDs:YB (auth: SX)
Chain Length:161
Number of Molecules:1
Biological Source:Leishmania major strain Friedlin
UniProt ID:E9AEE8 Pfam ID:PF01090
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Putative 40S ribosomal protein S21
Gene (Uniprot):LMJF_11_0760, LMJF_11_0780
Chain IDs:ZB (auth: SY)
Chain Length:164
Number of Molecules:1
Biological Source:Leishmania major strain Friedlin
UniProt ID:Q4QH01 Pfam ID:PF01249
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S24
Gene (Uniprot):S24E-2
Chain IDs:AC (auth: SZ)
Chain Length:137
Number of Molecules:1
Biological Source:Leishmania major strain Friedlin
UniProt ID:Q4Q1D2 Pfam ID:PF01282
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S25
Gene (Uniprot):LMJF_25_1190
Chain IDs:BC (auth: Sa)
Chain Length:120
Number of Molecules:1
Biological Source:Leishmania major strain Friedlin
UniProt ID:Q4Q9X4 Pfam ID:PF03297
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S26
Gene (Uniprot):LMJF_28_0540
Chain IDs:CC (auth: Sb)
Chain Length:112
Number of Molecules:1
Biological Source:Leishmania major strain Friedlin
UniProt ID:Q4Q8L6 Pfam ID:PF01283
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Putative 40S ribosomal protein S27-1
Gene (Uniprot):LMJF_36_3750
Chain IDs:DC (auth: Sc)
Chain Length:219
Number of Molecules:1
Biological Source:Leishmania major strain Friedlin
UniProt ID:Q4Q140 Pfam ID:PF01667
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Putative 40S ribosomal protein S33
Gene (Uniprot):S33-1
Chain IDs:EC (auth: Sd)
Chain Length:87
Number of Molecules:1
Biological Source:Leishmania major strain Friedlin
UniProt ID:Q4Q931 Pfam ID:PF01200
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S30
Gene (Uniprot):LMJF_30_0670, LMJF_30_0680, LMJF_30_0690
Chain IDs:FC (auth: Se)
Chain Length:273
Number of Molecules:1
Biological Source:Leishmania major strain Friedlin
UniProt ID:Q4Q7P0 Pfam ID:PF04758
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Ubiquitin-60S ribosomal protein L40
Gene (Uniprot):LMJF_14_1270
Chain IDs:GC (auth: Sf)
Chain Length:265
Number of Molecules:1
Biological Source:Leishmania major strain Friedlin
UniProt ID:Q4QFK7 Pfam ID:PF00240, PF01599
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Guanine nucleotide-binding protein subunit beta-like protein
Gene (Uniprot):LACK2
Chain IDs:HC (auth: Sg)
Chain Length:249
Number of Molecules:1
Biological Source:Leishmania major strain Friedlin
UniProt ID:Q4Q7Y7 Pfam ID:PF00400
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Putative RNA binding protein
Gene (Uniprot):LMJF_32_0750
Chain IDs:IC (auth: Sh)
Chain Length:235
Number of Molecules:1
Biological Source:Leishmania major strain Friedlin
UniProt ID:Q4Q5K7 Pfam ID:PF00076
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
A2M G A modified residue
OMG G G modified residue
OMU C U modified residue
PSU G U modified residue
Ligand Molecules
NA
Primary Citation
p -Alkoxy-Substituted Anisomycins with Potent Anti-Trypanosomiasis Activity and Expanded Modes of Action.
J.Med.Chem. 68 20264 20282 (2025)
PMID: 40980996 DOI: 10.1021/acs.jmedchem.5c01291

Abstact

Neglected tropical diseases caused by trypanosomatid parasites present a major public healthcare issue, partly due to emerging resistance. Attachment of ω-alkynyl chains characteristic of the lipid tails of antiparasitic peptides to the p-position of anisomycin gave ethers exhibiting potent activity, rivalling that of the parent ribosomal inhibitor, especially against resistant Leishmania strains. Single-particle cryoelectron microscopy analysis revealed that O-propargyl anisomycin binds to the highly conserved peptidyl transferase center of the ribosome similar to the parent inhibitor. Thermal proteomic profiling and gene ontology analysis demonstrated that O-propargyl anisomycin exhibited a broader mode of action, including activity against glycosome-associated proteins. Alkynyl substituents improved antiparasitic activity against resistant strains, likely by enlarging the mode of action, offering a novel path toward therapy against trypanosomatid infections.

Legend

Protein

Chemical

Disease

Primary Citation of related structures
9HL9
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