9HH1 image
Deposition Date 2024-11-20
Release Date 2025-04-16
Last Version Date 2025-04-16
Entry Detail
PDB ID:
9HH1
Title:
LysR Type Transcriptional Regulator LsrB from Agrobacterium tumefaciens
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
3.90 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Transcriptional regulator, LysR family
Gene (Uniprot):Atu2186
Chain IDs:A, B
Chain Length:312
Number of Molecules:2
Biological Source:Agrobacterium fabrum str. C58
Ligand Molecules
Primary Citation
Two redox-responsive LysR-type transcription factors control the oxidative stress response of Agrobacterium tumefaciens.
Nucleic Acids Res. 53 ? ? (2025)
PMID: 40193708 DOI: 10.1093/nar/gkaf267

Abstact

Pathogenic bacteria often encounter fluctuating reactive oxygen species (ROS) levels, particularly during host infection, necessitating robust redox-sensing mechanisms for survival. The LysR-type transcriptional regulator (LTTR) OxyR is a widely conserved bacterial thiol-based redox sensor. However, members of the Rhizobiales also encode LsrB, a second LTTR with potential redox-sensing function. This study explores the roles of OxyR and LsrB in the plant-pathogen Agrobacterium tumefaciens. Through single and combined deletions, we observed increased H2O2 sensitivity, underscoring their function in oxidative defense. Genome-wide transcriptome profiling under H2O2 exposure revealed that OxyR and LsrB co-regulate key antioxidant genes, including katG, encoding a bifunctional catalase/peroxidase. Agrobacterium tumefaciens LsrB possesses four cysteine residues potentially involved in redox sensing. To elucidate the structural basis for redox-sensing, we applied single-particle cryo-EM (cryogenic electron microscopy) to experimentally confirm an AlphaFold model of LsrB, identifying two proximal cysteine pairs. In vitro thiol-trapping coupled with mass spectrometry confirmed reversible thiol modifications of all four residues, suggesting a functional role in redox regulation. Collectively, these findings reveal that A. tumefaciens employs two cysteine-based redox sensing transcription factors, OxyR and LsrB, to withstand oxidative stress encountered in host and soil environments.

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