9HGJ image
Deposition Date 2024-11-19
Release Date 2025-10-22
Last Version Date 2025-10-22
Entry Detail
PDB ID:
9HGJ
Keywords:
DNA BINDING PROTEIN
Title:
HSV-1 Origin Binding Protein in complex with double-stranded DNA recognition sequence OriS and non-hydrolyzable ATP analog
Biological Source:
Source Organism:
Human alphaherpesvirus 1 strain KOS (Taxon ID: 10306)
synthetic construct (Taxon ID: 32630)
Host Organism:
Spodoptera frugiperda
Method Details:
Experimental Method:
ELECTRON MICROSCOPY
Resolution:
3.53 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
9HGJ validation report
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Replication origin-binding protein
Gene (Uniprot):UL9
Chain IDs:A, B
Chain Length:854
Number of Molecules:2
Biological Source:Human alphaherpesvirus 1 strain KOS
UniProt ID:D3YPE9 Pfam ID:PF02399
Polymer Type:polydeoxyribonucleotide
Molecule:DNA (5'-D(P*TP*AP*TP*TP*GP*GP*GP*AP*CP*GP*AP*AP*GP*TP*GP*CP*GP*AP*AP*CP*GP*CP*TP*T)-3')
Chain IDs:C
Chain Length:80
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:DNA (5'-D(P*AP*AP*GP*CP*GP*TP*TP*CP*GP*CP*AP*CP*TP*TP*CP*GP*TP*CP*CP*CP*AP*AP*TP*A)-3')
Chain IDs:D
Chain Length:80
Number of Molecules:1
Biological Source:synthetic construct
Ligand Molecules
AGS
MG
Primary Citation
The Herpes simplex Origin Binding Protein: Mechanisms for sequence specific DNA binding and dimerization revealed by Cryo-EM
Nucleic Acids Res. ? ? ? (2025)
DOI: 10.1093/nar/gkaf1029
Primary Citation of related structures
9HGJ