9HGA image
Deposition Date 2024-11-19
Release Date 2025-04-16
Last Version Date 2025-04-16
Entry Detail
PDB ID:
9HGA
Title:
BAM-SurA-darobactin complex in the swing-out state
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
3.62 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Outer membrane protein assembly factor BamA
Gene (Uniprot):bamA
Chain IDs:A
Chain Length:790
Number of Molecules:1
Biological Source:Escherichia coli K-12
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Outer membrane protein assembly factor BamB
Gene (Uniprot):bamB
Chain IDs:B
Chain Length:381
Number of Molecules:1
Biological Source:Escherichia coli K-12
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Outer membrane protein assembly factor BamC
Gene (Uniprot):bamC
Chain IDs:C
Chain Length:320
Number of Molecules:1
Biological Source:Escherichia coli K-12
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Outer membrane protein assembly factor BamD
Gene (Uniprot):bamD
Chain IDs:D
Chain Length:226
Number of Molecules:1
Biological Source:Escherichia coli K-12
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Outer membrane protein assembly factor BamE
Gene (Uniprot):bamE
Chain IDs:E
Chain Length:102
Number of Molecules:1
Biological Source:Escherichia coli K-12
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Chaperone SurA
Gene (Uniprot):surA
Chain IDs:F
Chain Length:412
Number of Molecules:1
Biological Source:Escherichia coli K-12
Polymer Type:polypeptide(L)
Molecule:Darobactin A
Chain IDs:G
Chain Length:7
Number of Molecules:1
Biological Source:Photorhabdus
Ligand Molecules
Peptide-like Molecules
PRD_002330
Primary Citation
Architecture and conformational dynamics of the BAM-SurA holo insertase complex.
Sci Adv 11 eads6094 eads6094 (2025)
PMID: 40184469 DOI: 10.1126/sciadv.ads6094

Abstact

The proper folding of outer membrane proteins in Gram-negative bacteria relies on their delivery to the β-barrel assembly machinery (BAM) complex. The mechanism by which survival protein A (SurA), the major periplasmic chaperone, facilitates this process is not well understood. We determine the structure of the holo insertase complex, where SurA binds BAM for substrate delivery. High-resolution cryo-electron microscopy structures of four different states and a three-dimensional variability analysis show that the holo insertase complex has a large motional spectrum. SurA bound to BAM can undergo a large swinging motion between two states. This motion is uncoupled from the conformational flexibility of the BamA barrel, which can open and close without affecting SurA binding. Notably, we observed conformational coupling of the SurA swing state and the carboxyl-terminal helix grip domain of BamC. Substrate delivery by SurA to BAM appears to follow a concerted motion that encodes a gated delivery pathway through the BAM accessory proteins to the membrane entry site.

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Primary Citation of related structures