ISDA

Deposition Date 2024-11-13

Release Date 2025-02-26

Last Version Date 2025-02-26

Entry Detail

PDB ID:

9HE1

Keywords:

MEMBRANE PROTEIN

Title:

Structure of the Xenorceptide A2-bound E. coli BAM complex (BamABCDE)

Biological Source:

Source Organism:

Escherichia coli K-12 (Taxon ID: 83333)
synthetic construct (Taxon ID: 32630)

Host Organism:

Escherichia coli BL21(DE3)

Method Details:

Experimental Method:

ELECTRON MICROSCOPY

Resolution:

3.00 Å

Aggregation State:

PARTICLE

Reconstruction Method:

SINGLE PARTICLE

Download Validation Report

Macromolecular Entities

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Outer membrane protein assembly factor BamA
Gene (Uniprot):bamA
Chain IDs:A
Chain Length:810
Number of Molecules:1
Biological Source:Escherichia coli K-12

UniProt ID:P0A940 Pfam ID:PF07244, PF01103

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Outer membrane protein assembly factor BamB
Gene (Uniprot):bamB
Chain IDs:B
Chain Length:400
Number of Molecules:1
Biological Source:Escherichia coli K-12

UniProt ID:P77774 Pfam ID:PF01011, PF13360

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Outer membrane protein assembly factor BamC
Gene (Uniprot):bamC
Chain IDs:C
Chain Length:344
Number of Molecules:1
Biological Source:Escherichia coli K-12

UniProt ID:P0A903 Pfam ID:PF06804

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Outer membrane protein assembly factor BamD
Gene (Uniprot):bamD
Chain IDs:D
Chain Length:245
Number of Molecules:1
Biological Source:Escherichia coli K-12

UniProt ID:P0AC02 Pfam ID:PF13525

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Outer membrane protein assembly factor BamE
Gene (Uniprot):bamE
Chain IDs:E
Chain Length:121
Number of Molecules:1
Biological Source:Escherichia coli K-12

UniProt ID:P0A937 Pfam ID:PF04355

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:RSAM-modified RiPP, XyeA family
Gene (Uniprot):BHU62_06565
Chain IDs:F (auth: G)
Chain Length:12
Number of Molecules:1
Biological Source:synthetic construct

UniProt ID:A0A1Q4P361

Ligand Molecules

Primary Citation

Antibiotics that Kill Gram-negative Bacteria by Restructuring the Outer Membrane Protein BamA

Modaresi, S.M, Sugiyama, R, Tram, N.D.T, Jakob, R.P, Phan, C.S, Saei, A.A, Morishita, Y, Muhlethaler, T, Lim, J, Ritz, D, Long, P.S.Y, Lehner, P.A, Lim, Z.H, Degen, M, Yao, Z, Maier, T, Hou, Y, Lee, J.Y, Xu, J, Yeat, A.Y.J, Koh, K.T.S, Goh, W.Y, Ling, S.Y.H, Chua, P.W.L, Yamazaki, M, Ee, P.L.R, Hiller, S, Morinaka, B.I.Show

Biorxiv ? ? ? (2024)

DOI: 10.1101/2024.12.16.628070

Primary Citation of related structures