9HDF image
Deposition Date 2024-11-12
Release Date 2025-11-12
Last Version Date 2025-11-12
Entry Detail
PDB ID:
9HDF
Title:
Glucocorticoid Receptor Ligand Binding Domain in complex with dexamethasone
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.78 Å
R-Value Free:
0.24
R-Value Work:
0.21
R-Value Observed:
0.21
Space Group:
P 21 21 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Ancestral Glucocorticoid Receptor2 ligand binding domain
Chain IDs:A, C, D, F, G, H, I, L, M, P
Chain Length:248
Number of Molecules:10
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Ancestral Glucocorticoid Receptor2 ligand binding domain
Chain IDs:B, E, J, K, N, O
Chain Length:248
Number of Molecules:6
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Nuclear receptor subfamily 0 group B member 2
Gene (Uniprot):NR0B2
Chain IDs:Q (auth: a), R (auth: b), S (auth: c), T (auth: d), U (auth: e), V (auth: f), W (auth: g), X (auth: h), Y (auth: i), Z (auth: j), AA (auth: k), BA (auth: l), CA (auth: m), DA (auth: n), EA (auth: o), FA (auth: p)
Chain Length:248
Number of Molecules:16
Biological Source:Homo sapiens
Primary Citation

Abstact

The glucocorticoid receptor (GR) is a leading drug target due to its antiinflammatory and immunosuppressive roles. The functional oligomeric conformation of full-length GR (FL-GR), which is key for its biological activity, remains disputed. Here we present a new crystal structure of agonist-bound GR ligand-binding domain (GR-LBD) comprising eight copies of a noncanonical dimer. We verified the biological relevance of this dimer for receptor multimerization in wild-type and selected FL-GR mutants using molecular dynamics and crosslinking-mass spectrometry together with fluorescence microscopy and transcriptomic analysis in living cells. Self-association of this GR-LBD basic dimer in two mutually exclusive assemblies reveals clues for FL-GR multimerization and activity in cells. We propose a model for the structure of multidomain GR based on our new data and suggest a detailed oligomerization pathway. This model reconciles all currently available structural and functional information and provides a more comprehensive understanding of the rare disorder, generalized glucocorticoid resistance.

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Primary Citation of related structures
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