9HD7 image
Deposition Date 2024-11-11
Release Date 2025-11-12
Last Version Date 2025-11-12
Entry Detail
PDB ID:
9HD7
Keywords:
MEMBRANE PROTEIN
Title:
Cryo-EM structure of photosystem II C2S2M2L2 supercomplex from the green alga Chlorella ohadii
Biological Source:
Source Organism:
Chlorella ohadii (Taxon ID: 2649997)
Method Details:
Experimental Method:
ELECTRON MICROSCOPY
Resolution:
2.95 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
9HD7 validation report
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Chlorophyll a-b binding protein Lhcbm-I
Chain IDs:A (auth: 1), D (auth: 4), I (auth: 11), L (auth: 14), U (auth: G), UA (auth: g)
Chain Length:249
Number of Molecules:6
Biological Source:Chlorella ohadii
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Chlorophyll a-b binding protein, chloroplastic
Gene (Uniprot):COHA_005951
Chain IDs:K (auth: 13), N (auth: 16)
Chain Length:243
Number of Molecules:2
Biological Source:Chlorella ohadii
UniProt ID:A0AAD5H446
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Chlorophyll a-b binding protein, chloroplastic
Gene (Uniprot):COHA_005950
Chain IDs:B (auth: 2), E (auth: 5), J (auth: 12), M (auth: 15), BA (auth: N), BB (auth: n)
Chain Length:247
Number of Molecules:6
Biological Source:Chlorella ohadii
UniProt ID:A0AAD5DLH1
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Chlorophyll a-b binding protein, chloroplastic
Gene (Uniprot):COHA_000579
Chain IDs:C (auth: 3), F (auth: 6)
Chain Length:259
Number of Molecules:2
Biological Source:Chlorella ohadii
UniProt ID:A0AAD5DXI2
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Chloroplast photosystem II 10 kDa protein
Chain IDs:G (auth: 7), H (auth: 8)
Chain Length:140
Number of Molecules:2
Biological Source:Chlorella ohadii
UniProt ID:A0A5P4NAS4 Pfam ID:PF04725
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem II protein D1
Gene (Uniprot):psbA1
Chain IDs:O (auth: A), OA (auth: a)
Chain Length:353
Number of Molecules:2
Biological Source:Chlorella ohadii
UniProt ID:W8SIR2 Pfam ID:PF00124
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem II CP47 reaction center protein
Gene (Uniprot):psbB
Chain IDs:P (auth: B), PA (auth: b)
Chain Length:508
Number of Molecules:2
Biological Source:Chlorella ohadii
UniProt ID:W8TIK4 Pfam ID:PF00421
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem II CP43 reaction center protein
Gene (Uniprot):psbC
Chain IDs:Q (auth: C), QA (auth: c)
Chain Length:473
Number of Molecules:2
Biological Source:Chlorella ohadii
UniProt ID:A0A076EAP1 Pfam ID:PF00421
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem II D2 protein
Gene (Uniprot):psbD
Chain IDs:R (auth: D), RA (auth: d)
Chain Length:352
Number of Molecules:2
Biological Source:Chlorella ohadii
UniProt ID:W8SYD4 Pfam ID:PF00124
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Cytochrome b559 subunit alpha
Gene (Uniprot):psbE
Chain IDs:S (auth: E), SA (auth: e)
Chain Length:83
Number of Molecules:2
Biological Source:Chlorella ohadii
UniProt ID:W8SU91 Pfam ID:PF00283, PF00284
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Cytochrome b559 subunit beta
Gene (Uniprot):psbF
Chain IDs:T (auth: F), TA (auth: f)
Chain Length:41
Number of Molecules:2
Biological Source:Chlorella ohadii
UniProt ID:W8SIQ3 Pfam ID:PF00283
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem II reaction center protein H
Gene (Uniprot):psbH
Chain IDs:V (auth: H), VA (auth: h)
Chain Length:80
Number of Molecules:2
Biological Source:Chlorella ohadii
UniProt ID:W8SIT0 Pfam ID:PF00737
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem II reaction center protein I
Gene (Uniprot):psbI
Chain IDs:W (auth: I), WA (auth: i)
Chain Length:38
Number of Molecules:2
Biological Source:Chlorella ohadii
UniProt ID:A0A5P4ND48 Pfam ID:PF02532
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem II reaction center protein J
Gene (Uniprot):psbJ
Chain IDs:X (auth: J), XA (auth: j)
Chain Length:42
Number of Molecules:2
Biological Source:Chlorella ohadii
UniProt ID:W8TIH6 Pfam ID:PF01788
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem II reaction center protein K
Gene (Uniprot):psbK
Chain IDs:Y (auth: K), YA (auth: k)
Chain Length:42
Number of Molecules:2
Biological Source:Chlorella ohadii
UniProt ID:P56348 Pfam ID:PF02533
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem II reaction center protein L
Gene (Uniprot):psbL
Chain IDs:Z (auth: L), ZA (auth: l)
Chain Length:38
Number of Molecules:2
Biological Source:Chlorella ohadii
UniProt ID:P56339 Pfam ID:PF02419
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem II reaction center protein M
Gene (Uniprot):psbM
Chain IDs:AA (auth: M), AB (auth: m)
Chain Length:34
Number of Molecules:2
Biological Source:Chlorella ohadii
UniProt ID:A0A5P4NAV9 Pfam ID:PF05151
Polymer Type:polypeptide(L)
Molecule:Chloroplast oxygen-evolving enhancer protein 1b (PsbO)
Chain IDs:CA (auth: O), CB (auth: o)
Chain Length:305
Number of Molecules:2
Biological Source:Chlorella ohadii
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:PWWP domain-containing protein
Gene (Uniprot):COHA_002381
Chain IDs:DA (auth: P), DB (auth: p)
Chain Length:915
Number of Molecules:2
Biological Source:Chlorella ohadii
UniProt ID:A0AAD5H4X0
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Chloroplast oxygen-evolving enhancer protein 3
Chain IDs:EA (auth: Q), EB (auth: q)
Chain Length:203
Number of Molecules:2
Biological Source:Chlorella ohadii
UniProt ID:A0A5P4NB29 Pfam ID:PF05757
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Chlorophyll a-b binding protein, chloroplastic
Gene (Uniprot):COHA_000470
Chain IDs:FA (auth: R), FB (auth: r)
Chain Length:297
Number of Molecules:2
Biological Source:Chlorella ohadii
UniProt ID:A0AAD5E2W2
Polymer Type:polypeptide(L)
Molecule:Chlorophyll a-b binding protein, chloroplastic
Chain IDs:GA (auth: S), GB (auth: s)
Chain Length:293
Number of Molecules:2
Biological Source:Chlorella ohadii
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem II reaction center protein T
Gene (Uniprot):psbT
Chain IDs:HA (auth: T), HB (auth: t)
Chain Length:31
Number of Molecules:2
Biological Source:Chlorella ohadii
UniProt ID:P56327 Pfam ID:PF01405
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Chloroplast PsbY
Chain IDs:IA (auth: U), IB (auth: u)
Chain Length:367
Number of Molecules:2
Biological Source:Chlorella ohadii
UniProt ID:A0A5P4NEE0
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem II reaction center protein Psb30
Gene (Uniprot):ycf12
Chain IDs:JA (auth: V), JB (auth: v)
Chain Length:33
Number of Molecules:2
Biological Source:Chlorella ohadii
UniProt ID:A0A076EAR3 Pfam ID:PF05969
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:PSII 6.1 kDa protein
Gene (Uniprot):COHA_001206
Chain IDs:KA (auth: W), KB (auth: w)
Chain Length:447
Number of Molecules:2
Biological Source:Chlorella ohadii
UniProt ID:A0AAD5DZE4
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem II reaction center protein X (PsbX)
Gene (Uniprot):COHA_004796
Chain IDs:LA (auth: X), LB (auth: x)
Chain Length:100
Number of Molecules:2
Biological Source:Chlorella ohadii
UniProt ID:A0AAD5H2N2
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Chlorophyll a-b binding protein, chloroplastic
Gene (Uniprot):COHA_005245
Chain IDs:MA (auth: Y), MB (auth: y)
Chain Length:256
Number of Molecules:2
Biological Source:Chlorella ohadii
UniProt ID:A0AAD5DNU0
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem II reaction center protein Z
Gene (Uniprot):psbZ
Chain IDs:NA (auth: Z), NB (auth: z)
Chain Length:62
Number of Molecules:2
Biological Source:Chlorella ohadii
UniProt ID:W8SKL0 Pfam ID:PF01737
Ligand Molecules
3PH
BCR
BCT
CHL
CL
CLA
DGD
FE2
HEM
LHG
LMG
LNL
LUT
NEX
OEX
PAM
PHO
PL9
SQD
STE
XAT
Primary Citation
Cryo-EM structure of photosystem II supercomplex from Chlorella ohadii, a green microalga with extreme phototolerance
Nature Communications ? ? ? (2025)
DOI: 10.1038/s41467-025-65861-2
Primary Citation of related structures
9HD7
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