9HD4 image
Deposition Date 2024-11-11
Release Date 2025-11-19
Last Version Date 2026-01-28
Entry Detail
PDB ID:
9HD4
Title:
LecB in complex with photoswitchable compound GTB
Biological Source:
Source Organism(s):
Expression System(s):
Method Details:
Experimental Method:
Resolution:
1.49 Å
R-Value Free:
0.21
R-Value Work:
0.14
Space Group:
C 2 2 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Fucose-binding lectin PA-IIL
Gene (Uniprot):lecB
Chain IDs:A, B, C, D
Chain Length:114
Number of Molecules:4
Biological Source:Pseudomonas aeruginosa
Primary Citation
Synthesis, photochemical and biological evaluation of novel photoswitchable glycomimetic ligands of Pseudomonas aeruginosa LecB.
Rsc Adv 15 49796 49808 (2025)
PMID: 41393209 DOI: 10.1039/d5ra06897e

Abstact

Bacterial multidrug resistance (MDR) poses a major threat to global health. The continued use of antibiotics, combined with genetic variations and exposure to nosocomial infections, has led to the selection and spread of multidrug-resistant bacteria. In recent years, photopharmacology has emerged as a strategy to combat MDR by enabling precise, light-controlled spatiotemporal modulation of the biological activity of photo-switchable compounds. Among different microbial species, Pseudomonas aeruginosa is a prominent bacterium involved in acute and chronic lung infections, posing a significant health concern, particularly among hospitalized and immunocompromised patients. The bacterium's capacity to form biofilms, a key factor in the development of MDR, is closely linked to the activity of the virulence factor LecB, a carbohydrate-binding protein with a well-documented role in biofilm formation. In this study, we report the design, synthesis and biological evaluation of two novel photoswitchable LecB modulators, photofucose-1 and photofucose-2. Isothermal Titration Calorimetry (ITC) analysis revealed that photofucose-2 binds LecB with high affinity, exhibiting a distinct difference in dissociation constants (K d) between its cis and trans isomers. Moreover, we determined the X-ray crystal structure of the LecB-photofucose-2 complex, offering insights into its binding mechanism. These findings lay the groundwork for the rational, structure-based design of novel light-responsive compounds targeting LecB and represent a potential new avenue in the development of innovative strategies to combat bacterial resistance.

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Primary Citation of related structures
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