9H9W image
Entry Detail
PDB ID:
9H9W
Title:
Crystal structure of metal-free LmrR_V15Bpy in an open state
Biological Source:
PDB Version:
Deposition Date:
2024-11-01
Release Date:
2025-03-05
Method Details:
Experimental Method:
Resolution:
2.26 Å
R-Value Free:
0.29
R-Value Work:
0.22
R-Value Observed:
0.22
Space Group:
C 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Transcriptional regulator, PadR-like family
Mutations:Val15 replaced by (2,2'-bipyridin-5-yl)alanine
Chain IDs:A, B
Chain Length:131
Number of Molecules:2
Biological Source:Lactococcus cremoris subsp. cremoris MG1363
Ligand Molecules
Primary Citation
An Artificial Copper-Michaelase Featuring a Genetically Encoded Bipyridine Ligand for Asymmetric Additions to Nitroalkenes.
Angew.Chem.Int.Ed.Engl. 64 e202423182 e202423182 (2025)
PMID: 39945539 DOI: 10.1002/anie.202423182

Abstact

Artificial metalloenzymes (ArMs) are an attractive approach to achieving "new to nature" biocatalytic transformations. In this work, a novel copper-dependent artificial Michaelase (Cu_Michaelase) comprising a genetically encoded copper-binding ligand, i. e. (2,2-bipyridin-5-yl)alanine (BpyA), was developed. For the first time, such an ArM containing a non-canonical metal-binding amino acid was successfully optimized through directed evolution. The evolved Cu_Michaelase was applied in the copper-catalyzed asymmetric addition of 2-acetyl azaarenes to nitroalkenes, yielding various γ-nitro butyric acid derivatives, which are precursors for a range of high-value-added pharmaceutically relevant compounds, with good yields and high enantioselectivities (up to >99 % yield and 99 % ee). Additionally, the evolved variant could be further used in a preparative-scale synthesis, providing chiral products for diverse derivatizations. X-ray crystal structure analysis confirmed the binding of Cu(II) ions to the BpyA residues and showed that, in principle, there is sufficient space for the 2-acetyl azaarene substrate to coordinate. Kinetic studies showed that the increased catalytic efficiency of the evolved enzyme is due to improvements in apparent KM for both substrates and a notable threefold increase in apparent kcat for 2-acetyl pyridine. This work illustrates the potential of artificial metalloenzymes exploiting non-canonical metal-binding ligands for new-to-nature biocatalysis.

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