9H95 image
Deposition Date 2024-10-29
Release Date 2025-09-24
Last Version Date 2025-09-24
Entry Detail
PDB ID:
9H95
Title:
YnaI in closed conformation purified in DDM with additional lipids showing ligand-filled pockets
Biological Source:
Source Organism:
Escherichia coli (Taxon ID: 562)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.20 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Low conductance mechanosensitive channel YnaI
Gene (Uniprot):ynaI
Chain IDs:A, B, C, D, E, F, G
Chain Length:351
Number of Molecules:7
Biological Source:Escherichia coli
Ligand Molecules
Primary Citation
Mechanosensitive channel engineering: A study on the mixing and matching of YnaI and MscS sensor paddles and pores.
Nat Commun 16 7881 7881 (2025)
PMID: 40849500 DOI: 10.1038/s41467-025-63253-0

Abstact

Osmotically varying environments are challenging for bacterial cells. Sudden drops in osmolytes cause an increased membrane tension and rupture the cells in the absence of protective mechanisms. One family of protective proteins are mechanosensitive channels of small conductance that open in response to membrane tension. Although these channels have a common architecture, they vary widely in the number of transmembrane helices, conductivity, and gating characteristics. Although there are various structures of channels in the open and closed state, the underlying common principles of the gating mechanism remain poorly understood. Here we show that YnaI opens by radial relocation of the transmembrane sensor paddles together with a shortening of the pore, which contrasts the prototypic smaller MscS. A chimera of both channels with the YnaI sensor paddles and the pore containing C-terminal part of MscS is functional and has the tension response of the paddle donor. Our research shows that elements with different structural opening mechanisms can be mixed and matched within one channel as long as they support the common area expansion on the periplasmic side.

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Primary Citation of related structures