9H89 image
Deposition Date 2024-10-28
Release Date 2025-10-22
Last Version Date 2025-10-22
Entry Detail
PDB ID:
9H89
Title:
BAM-hinge (LVPR) suppressor (T434A)
Biological Source:
Source Organism:
Escherichia coli (Taxon ID: 562)
Method Details:
Experimental Method:
Resolution:
4.00 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Outer membrane protein assembly factor BamA
Gene (Uniprot):bamA
Mutagens:T434A
Chain IDs:A
Chain Length:794
Number of Molecules:1
Biological Source:Escherichia coli
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Outer membrane protein assembly factor BamB
Gene (Uniprot):bamB
Chain IDs:B
Chain Length:373
Number of Molecules:1
Biological Source:Escherichia coli
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Outer membrane protein assembly factor BamC
Gene (Uniprot):bamC
Chain IDs:C
Chain Length:320
Number of Molecules:1
Biological Source:Escherichia coli
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Outer membrane protein assembly factor BamD
Gene (Uniprot):bamD
Chain IDs:D
Chain Length:226
Number of Molecules:1
Biological Source:Escherichia coli
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Outer membrane protein assembly factor BamE
Gene (Uniprot):bamE
Chain IDs:E
Chain Length:94
Number of Molecules:1
Biological Source:Escherichia coli
Ligand Molecules
Primary Citation
Molecular insights into how the motions of the beta-barrel and POTRA domains of BamA are coupled for efficient function.
Nat Commun 16 8832 8832 (2025)
PMID: 41044071 DOI: 10.1038/s41467-025-63897-y

Abstact

The β-barrel assembly machinery (BAM) inserts β-barrel proteins into the outer membrane of Gram-negative bacteria, forming an essential permeability barrier. The core BAM component, BamA, is a β-barrel protein with an N-terminal periplasmic extension comprising five polypeptide transport-associated (POTRA) domains. Whilst BamA's structure is well characterised, it remains unclear how β-barrel and POTRA domain motions are coordinated. Using BamA variants with mutations in the hinge region between these two domains, we demonstrate that hinge flexibility is required for BAM function. Cryo-electron microscopy suggests that hinge rigidity impairs function by structurally decoupling these domains. A screen for spontaneous suppressors identified a mutation at position T434 in an extracellular loop of BamA, which has been previously shown to suppress BAM defects. Studying this variant provides insights into its function as a general rescue mechanism. Our findings underscore how BamA's sequence has been evolutionarily optimised for efficient function.

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Primary Citation of related structures