9H40 image
Deposition Date 2024-10-17
Release Date 2024-12-11
Last Version Date 2024-12-11
Entry Detail
PDB ID:
9H40
Keywords:
Title:
Pinoresinol hydroxylase from Pseudomonas sp.
Biological Source:
Source Organism:
Pseudomonas sp. (Taxon ID: 306)
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.80 Å
R-Value Free:
0.22
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:p-cresol methylhydroxylase
Chain IDs:A, B (auth: C)
Chain Length:557
Number of Molecules:2
Biological Source:Pseudomonas sp.
Primary Citation
Biochemical and structural insights into pinoresinol hydroxylase from Pseudomonas sp.
Arch.Biochem.Biophys. 764 110247 110247 (2024)
PMID: 39613284 DOI: 10.1016/j.abb.2024.110247

Abstact

The vanillyl alcohol oxidase/p-cresol methylhydroxylase (VAO/PCMH) flavoprotein family comprises a broad spectrum of enzymes capable of catalyzing the oxidative bioconversions of various substrates. Among them, pinoresinol hydroxylase (PinH) from the 4-alkylphenol oxidizing subgroup initiates the oxidative degradation of (+)-pinoresinol, a lignan important for both lignin structure and plant defense. In this study, we present a detailed biochemical and structural characterization of PinH from Pseudomonas sp., with focus on its substrate specificity and product formation. PinH was expressed in E. coli and purified as FAD-containing, soluble protein. The flavoenzyme catalyzes the hydroxylation of both (+)-pinoresinol and eugenol. Structural analysis reveals its dimeric form, non-covalent flavin binding, and a large active site. AlphaFold models of the PinH-cytochrome complex demonstrate cytochrome's dual role in electron transfer and modulating PinH's conformation. A distinctive feature of PinH is a large cavity that hosts its multi-ring (+)-pinoresinol substrate. The capability of converting bulky lignans is particularly attractive for biotechnological applications aimed at producing high-value compounds from phenolic precursors. These insights expand our knowledge on the structure and mechanism of the VAO/PCMH flavoenzyme family members.

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