ISDA

Deposition Date 2024-10-16

Release Date 2025-07-16

Last Version Date 2025-07-16

Entry Detail

PDB ID:

9H39

Keywords:

PLANT PROTEIN

Title:

Crystal structure of Lotus japonicus CHIP13 extracellular domain in complex with a nanobody

Biological Source:

Source Organism:

Lotus japonicus (Taxon ID: 34305)
Lama glama (Taxon ID: 9844)

Host Organism:

Spodoptera frugiperda

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

1.66 Å

R-Value Free:

0.22

R-Value Work:

0.18

R-Value Observed:

0.18

Space Group:

P 1 21 1

Download Validation Report

Macromolecular Entities

Protein Blast

Polymer Type:polypeptide(L)
Molecule:LysM type receptor kinase
Gene (Uniprot):LYS13
Chain IDs:A, B
Chain Length:227
Number of Molecules:2
Biological Source:Lotus japonicus

UniProt ID:D3KU00 Pfam ID:PF01476

Polymer Type:polypeptide(L)
Molecule:anti-LYS13 VHH
Chain IDs:C, D
Chain Length:128
Number of Molecules:2
Biological Source:Lama glama

Modified Residue

Compound ID	Chain ID	Parent Comp ID	Details	2D Image
PCA	A	GLN	modified residue

Ligand Molecules

NAG

Primary Citation

Structural basis for size-selective perception of chitin in plants

Gysel, K, Hansen, S.B, Ruebsam, H, Alsarraf, H.M.A.B, Madland, E, Cheng, J.X.J, Baadegaard, C, Poulsen, E.C, Vinther, M, Fort, S, Stougaard, J, Andersen, K.R.Show

To Be Published ? ? ? (?)

Primary Citation of related structures