ISDA: 9H22

Deposition Date 2024-10-10

Release Date 2025-12-03

Last Version Date 2025-12-03

Entry Detail

PDB ID:

9H22

Keywords:

PHOTOSYNTHESIS

Title:

Cryo EM structure of RC-dLH complex model II from Gemmatimonas groenlandica

Biological Source:

Source Organism:

Gemmatimonas groenlandica (Taxon ID: 2732249)

Method Details:

Experimental Method:

ELECTRON MICROSCOPY

Resolution:

2.30 Å

Aggregation State:

PARTICLE

Reconstruction Method:

SINGLE PARTICLE

Download Validation Report

Macromolecular Entities

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Light-harvesting protein
Gene (Uniprot):HKW67_08790
Chain IDs:G (auth: AA), J (auth: AB), K (auth: AC), N (auth: AD), O (auth: AE), R (auth: AF), S (auth: AG), U (auth: AH), W (auth: AI), Y (auth: AJ), AA (auth: AK), CA (auth: AL), EA (auth: AM), HA (auth: AN), IA (auth: AO), LA (auth: AP), MA (auth: AQ), PA (auth: AR), RA (auth: AS), TA (auth: AT), VA (auth: AU), WA (auth: AV), YA (auth: AW), AB (auth: AX)
Chain Length:71
Number of Molecules:24
Biological Source:Gemmatimonas groenlandica

UniProt ID:A0A6M4IQ17 Pfam ID:PF00556

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Light-harvesting protein
Gene (Uniprot):HKW67_08795
Chain IDs:CB (auth: Aa), EB (auth: Ab), GB (auth: Ac), IB (auth: Ad), KB (auth: Ae), MB (auth: Af), OB (auth: Ag), QB (auth: Ah), SB (auth: Ai), UB (auth: Aj), WB (auth: Ak), YB (auth: Al), AC (auth: Am), CC (auth: An), EC (auth: Ao), GC (auth: Ap)
Chain Length:71
Number of Molecules:16
Biological Source:Gemmatimonas groenlandica

UniProt ID:A0A6M4INU2 Pfam ID:PF00556

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Light-harvesting protein
Gene (Uniprot):HKW67_08785
Chain IDs:H (auth: BA), I (auth: BB), L (auth: BC), M (auth: BD), P (auth: BE), Q (auth: BF), T (auth: BG), V (auth: BH), X (auth: BI), Z (auth: BJ), BA (auth: BK), DA (auth: BL), FA (auth: BM), GA (auth: BN), JA (auth: BO), KA (auth: BP), NA (auth: BQ), OA (auth: BR), QA (auth: BS), SA (auth: BT), UA (auth: BU), XA (auth: BV), ZA (auth: BW), BB (auth: BX), DB (auth: Ba), FB (auth: Bb), HB (auth: Bc), JB (auth: Bd), LB (auth: Be), NB (auth: Bf), PB (auth: Bg), RB (auth: Bh), TB (auth: Bi), VB (auth: Bj), XB (auth: Bk), ZB (auth: Bl), BC (auth: Bm), DC (auth: Bn), FC (auth: Bo), HC (auth: Bp)
Chain Length:44
Number of Molecules:40
Biological Source:Gemmatimonas groenlandica

UniProt ID:A0A6M4IQ93 Pfam ID:PF00556

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Photosynthetic reaction center cytochrome c subunit
Gene (Uniprot):HKW67_08810
Chain IDs:F (auth: C)
Chain Length:373
Number of Molecules:1
Biological Source:Gemmatimonas groenlandica

UniProt ID:A0A6M4ITL7 Pfam ID:PF02276

Polymer Type:polypeptide(L)
Molecule:reaction centre Ht su unit
Chain IDs:D (auth: H)
Chain Length:66
Number of Molecules:1
Biological Source:Gemmatimonas groenlandica

Polymer Type:polypeptide(L)
Molecule:reaction centre Hc sub unit
Chain IDs:E (auth: K)
Chain Length:180
Number of Molecules:1
Biological Source:Gemmatimonas groenlandica

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Reaction center protein L chain
Gene (Uniprot):HKW67_08800
Chain IDs:B (auth: L)
Chain Length:274
Number of Molecules:1
Biological Source:Gemmatimonas groenlandica

UniProt ID:A0A6M4IPC7 Pfam ID:PF00124

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Reaction center protein M chain
Gene (Uniprot):HKW67_08805
Chain IDs:C (auth: M)
Chain Length:392
Number of Molecules:1
Biological Source:Gemmatimonas groenlandica

UniProt ID:A0A6M4ILR2 Pfam ID:PF00124

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:reaction centre S sub unit
Gene (Uniprot):HKW67_10850
Chain IDs:A (auth: S)
Chain Length:204
Number of Molecules:1
Biological Source:Gemmatimonas groenlandica

UniProt ID:A0A6M4IPJ3

Ligand Molecules