ISDA: 9H19

Deposition Date 2024-10-09

Release Date 2025-10-29

Last Version Date 2025-10-29

Entry Detail

PDB ID:

9H19

Keywords:

PHOTOSYNTHESIS

Title:

Cryo-EM structure of RC-dLH complex model I from Gem. groenlandica strain TET16

Biological Source:

Source Organism:

Gemmatimonas groenlandica (Taxon ID: 2732249)

Method Details:

Experimental Method:

ELECTRON MICROSCOPY

Resolution:

2.30 Å

Aggregation State:

PARTICLE

Reconstruction Method:

SINGLE PARTICLE

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Macromolecular Entities

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Light-harvesting protein
Gene (Uniprot):HKW67_08790
Chain IDs:MA (auth: AA), PA (auth: AB), QA (auth: AC), TA (auth: AD), UA (auth: AE), XA (auth: AF), YA (auth: AG), AB (auth: AH), CB (auth: AI), EB (auth: AJ), GB (auth: AK), IB (auth: AL), KB (auth: AM), NB (auth: AN), OB (auth: AO), RB (auth: AP), SB (auth: AQ), VB (auth: AR), XB (auth: AS), ZB (auth: AT), BC (auth: AU), CC (auth: AV), EC (auth: AW), GC (auth: AX)
Chain Length:71
Number of Molecules:24
Biological Source:Gemmatimonas groenlandica

UniProt ID:A0A6M4IQ17 Pfam ID:PF00556

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Light-harvesting protein
Gene (Uniprot):HKW67_08795
Chain IDs:A (auth: Aa), C (auth: Ab), E (auth: Ac), G (auth: Ad), I (auth: Ae), K (auth: Af), M (auth: Ag), O (auth: Ah), Q (auth: Ai), S (auth: Aj), U (auth: Ak), W (auth: Al), Y (auth: Am), AA (auth: An), CA (auth: Ao), EA (auth: Ap)
Chain Length:71
Number of Molecules:16
Biological Source:Gemmatimonas groenlandica

UniProt ID:A0A6M4INU2 Pfam ID:PF00556

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Light-harvesting protein
Gene (Uniprot):HKW67_08785
Chain IDs:B (auth: Ba), D (auth: Bb), F (auth: Bc), H (auth: Bd), J (auth: Be), L (auth: Bf), N (auth: Bg), P (auth: Bh), R (auth: Bi), T (auth: Bj), V (auth: Bk), X (auth: Bl), Z (auth: Bm), BA (auth: Bn), DA (auth: Bo), FA (auth: Bp), NA (auth: BA), OA (auth: BB), RA (auth: BC), SA (auth: BD), VA (auth: BE), WA (auth: BF), ZA (auth: BG), BB (auth: BH), DB (auth: BI), FB (auth: BJ), HB (auth: BK), JB (auth: BL), LB (auth: BM), MB (auth: BN), PB (auth: BO), QB (auth: BP), TB (auth: BQ), UB (auth: BR), WB (auth: BS), YB (auth: BT), AC (auth: BU), DC (auth: BV), FC (auth: BW), HC (auth: BX)
Chain Length:44
Number of Molecules:40
Biological Source:Gemmatimonas groenlandica

UniProt ID:A0A6M4IQ93 Pfam ID:PF00556

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Photosynthetic reaction center cytochrome c subunit
Gene (Uniprot):HKW67_08810
Chain IDs:LA (auth: C)
Chain Length:373
Number of Molecules:1
Biological Source:Gemmatimonas groenlandica

UniProt ID:A0A6M4ITL7 Pfam ID:PF02276

Polymer Type:polypeptide(L)
Molecule:reaction centre Ht sub unit
Chain IDs:JA (auth: H)
Chain Length:60
Number of Molecules:1
Biological Source:Gemmatimonas groenlandica

Polymer Type:polypeptide(L)
Molecule:reaction centre Hc sub unit
Chain IDs:KA (auth: K)
Chain Length:179
Number of Molecules:1
Biological Source:Gemmatimonas groenlandica

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Reaction center protein L chain
Gene (Uniprot):HKW67_08800
Chain IDs:HA (auth: L)
Chain Length:274
Number of Molecules:1
Biological Source:Gemmatimonas groenlandica

UniProt ID:A0A6M4IPC7 Pfam ID:PF00124

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Reaction center protein M chain
Gene (Uniprot):HKW67_08805
Chain IDs:IA (auth: M)
Chain Length:392
Number of Molecules:1
Biological Source:Gemmatimonas groenlandica

UniProt ID:A0A6M4ILR2 Pfam ID:PF00124

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:reaction centre S sub unit
Gene (Uniprot):HKW67_10850
Chain IDs:GA (auth: S)
Chain Length:204
Number of Molecules:1
Biological Source:Gemmatimonas groenlandica

UniProt ID:A0A6M4IPJ3

Ligand Molecules