9GVF image
Deposition Date 2024-09-24
Release Date 2025-10-08
Last Version Date 2025-12-10
Entry Detail
PDB ID:
9GVF
Keywords:
Title:
Crystal structure of a computationally designed protein
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
1.60 Å
R-Value Free:
0.25
R-Value Work:
0.20
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:TRP_18 F116W
Mutagens:F116W
Chain IDs:A
Chain Length:215
Number of Molecules:1
Biological Source:synthetic construct
Primary Citation
De novo design and evolution of an artificial metathase for cytoplasmic olefin metathesis.
Nat Catal 8 1208 1219 (2025)
PMID: 41282371 DOI: 10.1038/s41929-025-01436-0

Abstact

Artificial metalloenzymes present a promising avenue for abiotic catalysis within living systems. However, their in vivo application is currently limited by critical challenges, particularly in selecting suitable protein scaffolds capable of binding abiotic cofactors and maintaining catalytic activity in complex media. Here we address these limitations by introducing an artificial metathase-an artificial metalloenzyme designed for ring-closing metathesis-for whole-cell biocatalysis. Our approach integrates a tailored metal cofactor into a hyper-stable, de novo-designed protein. By combining computational design with genetic optimization, a binding affinity (K D ≤ 0.2 μM) between the protein scaffold and cofactor is achieved through supramolecular anchoring. Directed evolution of the artificial metathase yielded variants exhibiting excellent catalytic performance (turnover number ≥1,000) and biocompatibility. This work represents a pronounced leap in the de novo design and in cellulo engineering of artificial metalloenzymes, paving the way for abiological catalysis in living systems.

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