9GVA image
Deposition Date 2024-09-23
Release Date 2024-12-25
Last Version Date 2024-12-25
Entry Detail
PDB ID:
9GVA
Keywords:
Title:
Crystal structure of the gamma carbonic anhydrase from Porphyromonas gingivalis
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.40 Å
R-Value Free:
0.19
R-Value Work:
0.16
Space Group:
P 65
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Hexapeptide transferase family protein
Gene (Uniprot):PG_1211
Chain IDs:A (auth: AAA), B (auth: BBB), C (auth: CCC)
Chain Length:192
Number of Molecules:3
Biological Source:Porphyromonas gingivalis
Ligand Molecules
Primary Citation
Kinetic and structural studies of gamma-carbonic anhydrase from the oral pathogen Porphyromonas gingivalis.
J.Struct.Biol. 217 108154 108154 (2024)
PMID: 39647519 DOI: 10.1016/j.jsb.2024.108154

Abstact

Porphyromonas gingivalis, a key pathogen in periodontal, plays a critical role in systemic pathologiesdiseases by evading host defence mechanisms and invading periodontal tissues. Targeting its virulence mechanisms and overcoming drug resistance are essential steps toward effective therapeutic development. In this study, we focused on the Carbonic Anhydrase (CA, EC: 4.2.1.1) encoded by P. gingivalis as a potential drug target. We determined the crystal structure of PgiCA γ at a resolution of 2.4 Å and conducted kinetic characterization. The structure revealed that active PgiCA γ forms a trimer, with each monomer comprising a left-handed β-helix capped by a C-terminal α-helix and coordinated to a catalytic zinc ion through three histidine residues. Interestingly, one monomer displayed an atypical α-helix conformation, likely due to close interactions with neighbouring trimers within the crystal lattice (a probable crystallographic artefact). These findings provide new insights into the structural and functional properties of PgiCA γ, emphasizing its potential as a target for the development of novel anti-virulence therapies against P. gingivalis.

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Disease

Primary Citation of related structures
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