ISDA: 9GV9

Deposition Date 2024-09-23

Release Date 2025-10-08

Last Version Date 2025-10-08

Entry Detail

PDB ID:

9GV9

Keywords:

LYASE

Title:

Structure of Heparinase I from Bacteroides eggerthii in complex with calcium cofactor and delta-UA(1-4)Glc 3, 6, N-Sulphated disaccharide

Biological Source:

Source Organism:

Bacteroides eggerthii (Taxon ID: 28111)

Host Organism:

Escherichia coli

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

1.72 Å

R-Value Free:

0.24

R-Value Work:

0.20

Space Group:

C 1 2 1

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Macromolecular Entities

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Heparin lyase I
Gene (Uniprot):HMPREF1016_01920
Chain IDs:A (auth: B), B (auth: A)
Chain Length:382
Number of Molecules:2
Biological Source:Bacteroides eggerthii

UniProt ID:E5WZ15 Pfam ID:PF14099

Ligand Molecules

ACT

SO4

Primary Citation

Bacteroides eggerthii heparin lyase I liberates the rare delta-GlcA(alpha1->4)Glc3,6,N-sulphated disaccharide motif contained within the pentasaccharide of the clinical anticoagulant fondaparinux sodium

Kandola, T.K, Mycroft-West, C, Andrade De Lima, M.L, Turner, A, Gardini, C, Urso, E, Miller, G.J, Bisio, A, Yates, E.A, Guerrini, M, Wu, L, Skidmore, M.A.Show

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Primary Citation of related structures

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