9GTE image
Deposition Date 2024-09-17
Release Date 2024-10-30
Last Version Date 2025-05-14
Entry Detail
PDB ID:
9GTE
Keywords:
Title:
Crystal structure of TRIM21 PRY-SPRY domain bound to Suramin
Biological Source:
Source Organism:
Mus musculus (Taxon ID: 10090)
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.30 Å
R-Value Free:
0.17
R-Value Work:
0.15
R-Value Observed:
0.16
Space Group:
P 21 21 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:E3 ubiquitin-protein ligase TRIM21
Gene (Uniprot):Trim21
Chain IDs:A (auth: B)
Chain Length:188
Number of Molecules:1
Biological Source:Mus musculus
Primary Citation
LOPAC library screening identifies suramin as a TRIM21 binder with a unique binding mode revealed by crystal structure.
Acta Crystallogr.,Sect.F 81 101 107 (2025)
PMID: 39955622 DOI: 10.1107/S2053230X25000913

Abstact

Differential scanning fluorimetry screening of the Library of Pharmacologically Active Compounds (LOPAC) identified four hits for the PRYSPRY domain of the human E3 ligase tripartite motif-containing protein 21 (TRIM21). Isothermal titration calorimetry subsequently confirmed suramin as a binder with micromolar affinity. To further investigate the binding mechanism, mouse TRIM21 was used as a structural surrogate due to its improved protein stability and high sequence similarity to the human counterpart. A crystal structure of the complex refined at 1.3 Å resolution revealed a unique binding mode, providing new avenues for targeting TRIM21 and for the development of proteolysis-targeting chimeras (PROTACs).

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Primary Citation of related structures
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