9GRC image
Deposition Date 2024-09-11
Release Date 2025-01-08
Last Version Date 2025-07-09
Entry Detail
PDB ID:
9GRC
Title:
Cryo-EM structure of lipoprotein-bound LolCDE in nanodiscs
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.50 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Lipoprotein-releasing system transmembrane protein LolC
Gene (Uniprot):lolC
Chain IDs:A (auth: C)
Chain Length:399
Number of Molecules:1
Biological Source:Escherichia coli K-12
Polymer Type:polypeptide(L)
Molecule:Lipoprotein-releasing system transmembrane protein LolE
Gene (Uniprot):lolE
Chain IDs:B (auth: E)
Chain Length:414
Number of Molecules:1
Biological Source:Escherichia coli K-12
Polymer Type:polypeptide(L)
Molecule:Lipoprotein-releasing system ATP-binding protein LolD
Gene (Uniprot):lolD
Chain IDs:C (auth: F), D
Chain Length:241
Number of Molecules:2
Biological Source:Escherichia coli K-12
Polymer Type:polypeptide(L)
Molecule:lipoprotein(LPP)
Chain IDs:E (auth: V)
Chain Length:10
Number of Molecules:1
Biological Source:Escherichia coli K-12
Primary Citation
Deciphering the molecular basis of lipoprotein recognition and transport by LolCDE.
Signal Transduct Target Ther 9 354 354 (2024)
PMID: 39725716 DOI: 10.1038/s41392-024-02067-w

Abstact

Outer membrane (OM) lipoproteins serve vital roles in Gram-negative bacteria, contributing to their pathogenicity and drug resistance. For these lipoproteins to function, they must be transported from the inner membrane (IM), where they are assembled, to the OM by the ABC transporter LolCDE. We have previously captured structural snapshots of LolCDE in multiple states, revealing its dynamic conformational changes. However, the exact mechanism by which LolCDE recognizes and transfers lipoprotein between domains remains unclear. Here, we characterized the E. coli LolCDE complex bound with endogenous lipoprotein or ATP to explore the molecular features governing its substrate binding and transport functions. We found that the N-terminal unstructured linker of lipoprotein is critical for efficient binding by LolCDE; it must be sufficiently long to keep the lipoprotein's main body outside the complex while allowing the triacyl chains to bind within the central cavity. Mutagenic assays identified key residues that mediate allosteric communication between the cytoplasmic and transmembrane domains and in the periplasmic domain to form a lipoprotein transport pathway at the LolC-LolE interface. This study provides insights into the OM lipoprotein relocation process mediated by LolCDE, with significant implications for antimicrobial drug development.

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Primary Citation of related structures