9GR1 image
Entry Detail
PDB ID:
9GR1
EMDB ID:
Keywords:
Title:
E. coli 70S-TEC complex in delivery state
Biological Source:
PDB Version:
Deposition Date:
2024-09-10
Release Date:
2024-11-20
Method Details:
Experimental Method:
Resolution:
3.17 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L33
Chain IDs:A (auth: 0)
Chain Length:55
Number of Molecules:1
Biological Source:Escherichia coli BL21(DE3)
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L34
Chain IDs:B (auth: 1)
Chain Length:46
Number of Molecules:1
Biological Source:Escherichia coli BL21(DE3)
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L35
Chain IDs:C (auth: 2)
Chain Length:65
Number of Molecules:1
Biological Source:Escherichia coli BL21(DE3)
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L36
Chain IDs:D (auth: 3)
Chain Length:38
Number of Molecules:1
Biological Source:Escherichia coli BL21(DE3)
Polymer Type:polyribonucleotide
Description:mRNA in SD-aSD duplex
Chain IDs:BB (auth: 4)
Chain Length:10
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polyribonucleotide
Description:16S ribosomal RNA
Chain IDs:E (auth: A)
Chain Length:2925
Number of Molecules:1
Biological Source:Escherichia coli BL21(DE3)
Polymer Type:polypeptide(L)
Description:Small ribosomal subunit protein uS2
Chain IDs:F (auth: B)
Chain Length:241
Number of Molecules:1
Biological Source:Escherichia coli BL21(DE3)
Polymer Type:polypeptide(L)
Description:Small ribosomal subunit protein uS3
Chain IDs:G (auth: C)
Chain Length:233
Number of Molecules:1
Biological Source:Escherichia coli BL21(DE3)
Polymer Type:polypeptide(L)
Description:Small ribosomal subunit protein uS4
Chain IDs:H (auth: D)
Chain Length:206
Number of Molecules:1
Biological Source:Escherichia coli BL21(DE3)
Polymer Type:polypeptide(L)
Description:Small ribosomal subunit protein uS5
Chain IDs:I (auth: E)
Chain Length:167
Number of Molecules:1
Biological Source:Escherichia coli BL21(DE3)
Polymer Type:polypeptide(L)
Description:Small ribosomal subunit protein bS6, fully modified isoform
Chain IDs:J (auth: F)
Chain Length:135
Number of Molecules:1
Biological Source:Escherichia coli BL21(DE3)
Polymer Type:polypeptide(L)
Description:Small ribosomal subunit protein uS7
Chain IDs:K (auth: G)
Chain Length:179
Number of Molecules:1
Biological Source:Escherichia coli BL21(DE3)
Polymer Type:polypeptide(L)
Description:Small ribosomal subunit protein uS8
Chain IDs:L (auth: H)
Chain Length:149
Number of Molecules:1
Biological Source:Escherichia coli BL21(DE3)
Polymer Type:polypeptide(L)
Description:Small ribosomal subunit protein uS9
Chain IDs:M (auth: I)
Chain Length:142
Number of Molecules:1
Biological Source:Escherichia coli BL21(DE3)
Polymer Type:polypeptide(L)
Description:Small ribosomal subunit protein uS10
Chain IDs:N (auth: J)
Chain Length:123
Number of Molecules:1
Biological Source:Escherichia coli BL21(DE3)
Polymer Type:polypeptide(L)
Description:Small ribosomal subunit protein uS11
Chain IDs:O (auth: K)
Chain Length:129
Number of Molecules:1
Biological Source:Escherichia coli BL21(DE3)
Polymer Type:polypeptide(L)
Description:Small ribosomal subunit protein uS12
Chain IDs:P (auth: L)
Chain Length:136
Number of Molecules:1
Biological Source:Escherichia coli BL21(DE3)
Polymer Type:polypeptide(L)
Description:Small ribosomal subunit protein uS13
Chain IDs:Q (auth: M)
Chain Length:127
Number of Molecules:1
Biological Source:Escherichia coli BL21(DE3)
Polymer Type:polypeptide(L)
Description:Small ribosomal subunit protein uS14
Chain IDs:R (auth: N)
Chain Length:117
Number of Molecules:1
Biological Source:Escherichia coli BL21(DE3)
Polymer Type:polypeptide(L)
Description:Small ribosomal subunit protein uS15
Chain IDs:S (auth: O)
Chain Length:115
Number of Molecules:1
Biological Source:Escherichia coli BL21(DE3)
Polymer Type:polypeptide(L)
Description:30S ribosomal protein S16
Chain IDs:T (auth: P)
Chain Length:118
Number of Molecules:1
Biological Source:Escherichia coli BL21(DE3)
Polymer Type:polypeptide(L)
Description:Small ribosomal subunit protein uS17
Chain IDs:U (auth: Q)
Chain Length:103
Number of Molecules:1
Biological Source:Escherichia coli BL21(DE3)
Polymer Type:polypeptide(L)
Description:Small ribosomal subunit protein bS18
Chain IDs:V (auth: R)
Chain Length:75
Number of Molecules:1
Biological Source:Escherichia coli BL21(DE3)
Polymer Type:polypeptide(L)
Description:30S ribosomal protein S19
Chain IDs:W (auth: S)
Chain Length:100
Number of Molecules:1
Biological Source:Escherichia coli BL21(DE3)
Polymer Type:polypeptide(L)
Description:Small ribosomal subunit protein bS20
Chain IDs:X (auth: T)
Chain Length:104
Number of Molecules:1
Biological Source:Escherichia coli BL21(DE3)
Polymer Type:polypeptide(L)
Description:Small ribosomal subunit protein bS21
Chain IDs:Y (auth: U)
Chain Length:71
Number of Molecules:1
Biological Source:Escherichia coli BL21(DE3)
Polymer Type:polyribonucleotide
Description:mRNA in ribosome channel
Chain IDs:Z (auth: X)
Chain Length:63
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polyribonucleotide
Description:tRNA(fmet) P-site
Chain IDs:CB (auth: Y)
Chain Length:59
Number of Molecules:1
Biological Source:Escherichia coli
Polymer Type:polyribonucleotide
Description:Phe-NH-tRNA(Phe) A-site
Chain IDs:AA (auth: Z)
Chain Length:76
Number of Molecules:1
Biological Source:Escherichia coli
Polymer Type:polyribonucleotide
Description:23S ribosomal RNA
Chain IDs:BA (auth: a)
Chain Length:2925
Number of Molecules:1
Biological Source:Escherichia coli BL21(DE3)
Polymer Type:polyribonucleotide
Description:5S ribosomal RNA
Chain IDs:CA (auth: b)
Chain Length:241
Number of Molecules:1
Biological Source:Escherichia coli BL21(DE3)
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L2
Chain IDs:DA (auth: c)
Chain Length:233
Number of Molecules:1
Biological Source:Escherichia coli BL21(DE3)
Polymer Type:polypeptide(L)
Description:Large ribosomal subunit protein uL3
Chain IDs:EA (auth: d)
Chain Length:206
Number of Molecules:1
Biological Source:Escherichia coli BL21(DE3)
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L4
Chain IDs:FA (auth: e)
Chain Length:167
Number of Molecules:1
Biological Source:Escherichia coli BL21(DE3)
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L5
Chain IDs:GA (auth: f)
Chain Length:135
Number of Molecules:1
Biological Source:Escherichia coli BL21(DE3)
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L6
Chain IDs:HA (auth: g)
Chain Length:179
Number of Molecules:1
Biological Source:Escherichia coli BL21(DE3)
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L9
Chain IDs:IA (auth: h)
Chain Length:149
Number of Molecules:1
Biological Source:Escherichia coli BL21(DE3)
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L13
Chain IDs:JA (auth: i)
Chain Length:142
Number of Molecules:1
Biological Source:Escherichia coli BL21(DE3)
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L14
Chain IDs:KA (auth: j)
Chain Length:123
Number of Molecules:1
Biological Source:Escherichia coli BL21(DE3)
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L15
Chain IDs:LA (auth: k)
Chain Length:129
Number of Molecules:1
Biological Source:Escherichia coli BL21(DE3)
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L16
Chain IDs:MA (auth: l)
Chain Length:136
Number of Molecules:1
Biological Source:Escherichia coli BL21(DE3)
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L17
Chain IDs:NA (auth: m)
Chain Length:127
Number of Molecules:1
Biological Source:Escherichia coli BL21(DE3)
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L18
Chain IDs:OA (auth: n)
Chain Length:117
Number of Molecules:1
Biological Source:Escherichia coli BL21(DE3)
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L19
Chain IDs:PA (auth: o)
Chain Length:115
Number of Molecules:1
Biological Source:Escherichia coli BL21(DE3)
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L20
Chain IDs:QA (auth: p)
Chain Length:118
Number of Molecules:1
Biological Source:Escherichia coli BL21(DE3)
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L21
Chain IDs:RA (auth: q)
Chain Length:103
Number of Molecules:1
Biological Source:Escherichia coli BL21(DE3)
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L22
Chain IDs:SA (auth: r)
Chain Length:75
Number of Molecules:1
Biological Source:Escherichia coli BL21(DE3)
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L23
Chain IDs:TA (auth: s)
Chain Length:100
Number of Molecules:1
Biological Source:Escherichia coli BL21(DE3)
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L24
Chain IDs:UA (auth: t)
Chain Length:104
Number of Molecules:1
Biological Source:Escherichia coli BL21(DE3)
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L25
Chain IDs:VA (auth: u)
Chain Length:71
Number of Molecules:1
Biological Source:Escherichia coli BL21(DE3)
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L27
Chain IDs:WA (auth: v)
Chain Length:85
Number of Molecules:1
Biological Source:Escherichia coli BL21(DE3)
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L28
Chain IDs:XA (auth: w)
Chain Length:78
Number of Molecules:1
Biological Source:Escherichia coli BL21(DE3)
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L29
Chain IDs:YA (auth: x)
Chain Length:63
Number of Molecules:1
Biological Source:Escherichia coli BL21(DE3)
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L30
Chain IDs:ZA (auth: y)
Chain Length:59
Number of Molecules:1
Biological Source:Escherichia coli BL21(DE3)
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L32
Chain IDs:AB (auth: z)
Chain Length:76
Number of Molecules:1
Biological Source:Escherichia coli BL21(DE3)
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
3AU AA U modified residue
4D4 MA ARG modified residue
4SU AA U modified residue
5MU AA U modified residue
7MG AA G modified residue
D2T P ASP modified residue
H2U AA U modified residue
MEQ EA GLN modified residue
MIA AA A modified residue
OMC CB C modified residue
PSU AA U modified residue
Primary Citation
Molecular basis of mRNA delivery to the bacterial ribosome.
Science 386 eado8476 eado8476 (2024)
PMID: 39607923 DOI: 10.1126/science.ado8476

Abstact

Protein synthesis begins with the formation of a ribosome-messenger RNA (mRNA) complex. In bacteria, the small ribosomal subunit (30S) is recruited to many mRNAs through base pairing with the Shine-Dalgarno (SD) sequence and RNA binding by ribosomal protein bS1. Translation can initiate on nascent mRNAs, and RNA polymerase (RNAP) can promote the recruitment of the pioneering 30S. Here, we examined 30S recruitment to nascent mRNAs using cryo-electron microscopy, single-molecule fluorescence colocalization, and in-cell cross-linking mass spectrometry. We show that bS1 delivers the mRNA to the ribosome for SD duplex formation and 30S activation. Additionally, bS1 and RNAP stimulate translation initiation. Our work provides a mechanistic framework for how the SD duplex, ribosomal proteins, and RNAP cooperate in 30S recruitment to mRNAs and establish transcription-translation coupling.

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Primary Citation of related structures