9GO3 image
Deposition Date 2024-09-04
Release Date 2025-02-05
Last Version Date 2025-08-20
Entry Detail
PDB ID:
9GO3
Title:
Sub-open structure of the mechanosensitive channel YbiO
Biological Source:
Source Organism:
Escherichia coli (Taxon ID: 562)
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.15 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Mechanosensitive channel protein
Chain IDs:A, B, C, D, E, F, G
Chain Length:749
Number of Molecules:7
Biological Source:Escherichia coli
Ligand Molecules
Primary Citation
The mechanosensitive channel YbiO has a conductance equivalent to the largest gated pore.
Structure 33 652 662.e3 (2025)
PMID: 39919733 DOI: 10.1016/j.str.2025.01.014

Abstact

Bacterial mechanosensitive channels are divided into large (MscL) and small (MscS-like) conductance families. The function of MscS and MscL is to protect cells against osmotic shock by acting as pressure safety valves. Within the MscS-like family, E. coli encodes much larger channels, such as YbiO, MscK, and MscM, but their physiological role remains unclear. Compared to MscL their conductances are reported as 3-10 times lower. We show that YbiO can achieve a conductance of ∼3 nS, and an equivalent pore opening of > 25 Å in diameter, equaling the known largest gated pore, MscL. We determine a cryoelectron microscopy (cryo-EM) structure of YbiO in a sub-open conformation, demonstrating the existence of multiple substates. One substate is consistent with the pore opening extent of our structure and the other matches states previously thought to resemble full openings. Our findings demonstrate surprising capabilities, hinting at new physiological roles for YbiO and potentially other MscS-like channels.

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Primary Citation of related structures