9GMJ image
Deposition Date 2024-08-28
Release Date 2025-09-10
Last Version Date 2025-09-10
Entry Detail
PDB ID:
9GMJ
Keywords:
HYDROLASE
Title:
The crystal structure of ManDH5 Selenomethionine derivative at 1.6 Angstroms resolution - a beta-D-Mannanase of GH5 family from Dictyoglomus thermophilium
Biological Source:
Source Organism:
Dictyoglomus thermophilum (Taxon ID: 14)
Host Organism:
Escherichia coli BL21(DE3)
Method Details:
Experimental Method:
X-RAY DIFFRACTION
Resolution:
1.60 Å
R-Value Free:
0.19
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
I 2 2 2
9GMJ validation report
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:DUF5060 domain-containing protein
Gene (Uniprot):ENW00_02810
Mutagens:Selenomethionine replacing all Metionine residues; According to the phase solution (performed using Crank 2), only 6 out of 7 MET residues were substituted by MSE. The first in the sequence appears to be MET.
Chain IDs:A
Chain Length:568
Number of Molecules:1
Biological Source:Dictyoglomus thermophilum
UniProt ID:A0A7C3MIF0
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
MSE A MET modified residue
Ligand Molecules
GOL
TRS
Primary Citation
The crystal structure of ManDH5 Selenomethionine derivative at 1.6 Angstroms Resolution - a beta-D-Mannanase of GH5 family from Dictyoglomus thermophilium
To Be Published ? ? ? (?)
Primary Citation of related structures
9GMJ