9GM6 image
Deposition Date 2024-08-28
Release Date 2025-03-26
Last Version Date 2025-05-14
Entry Detail
PDB ID:
9GM6
Title:
MukBEF in a nucleotide-bound state with open neck gate (heads core)
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.70 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Chromosome partition protein MukB
Gene (Uniprot):mukB
Chain IDs:D (auth: A), E (auth: B)
Chain Length:1482
Number of Molecules:2
Biological Source:Photorhabdus thracensis
Polymer Type:polypeptide(L)
Molecule:Chromosome partition protein MukF
Gene (Uniprot):mukF
Chain IDs:A (auth: C)
Chain Length:440
Number of Molecules:1
Biological Source:Photorhabdus thracensis
Polymer Type:polypeptide(L)
Molecule:Chromosome partition protein MukE
Gene (Uniprot):mukE
Chain IDs:B (auth: E), C (auth: F)
Chain Length:240
Number of Molecules:2
Biological Source:Photorhabdus thracensis
Polymer Type:polypeptide(L)
Molecule:Acyl carrier protein
Gene (Uniprot):acpP
Chain IDs:F (auth: G), G (auth: D)
Chain Length:78
Number of Molecules:2
Biological Source:Escherichia coli
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
4HH F SER modified residue
Primary Citation
Mechanism of DNA capture by the MukBEF SMC complex and its inhibition by a viral DNA mimic.
Cell 188 2465 ? (2025)
PMID: 40168993 DOI: 10.1016/j.cell.2025.02.032

Abstact

Ring-like structural maintenance of chromosome (SMC) complexes are crucial for genome organization and operate through mechanisms of DNA entrapment and loop extrusion. Here, we explore the DNA loading process of the bacterial SMC complex MukBEF. Using cryoelectron microscopy (cryo-EM), we demonstrate that ATP binding opens one of MukBEF's three potential DNA entry gates, exposing a DNA capture site that positions DNA at the open neck gate. We discover that the gp5.9 protein of bacteriophage T7 blocks this capture site by DNA mimicry, thereby preventing DNA loading and inactivating MukBEF. We propose a comprehensive and unidirectional loading mechanism in which DNA is first captured at the complex's periphery and then ingested through the DNA entry gate, powered by a single cycle of ATP hydrolysis. These findings illuminate a fundamental aspect of how ubiquitous DNA organizers are primed for genome maintenance and demonstrate how this process can be disrupted by viruses.

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Primary Citation of related structures