9GM5 image
Entry Detail
PDB ID:
9GM5
EMDB ID:
Keywords:
Title:
OCCM maturation intermediate stalled with an Arginine Finger mutation in Mcm5: Conformer 1
Biological Source:
PDB Version:
Deposition Date:
2024-08-28
Release Date:
2025-03-05
Method Details:
Experimental Method:
Resolution:
3.70 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:DNA replication licensing factor MCM2
Chain IDs:A (auth: 2)
Chain Length:868
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Description:DNA replication licensing factor MCM3
Chain IDs:B (auth: 3)
Chain Length:1006
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Description:DNA replication licensing factor MCM4
Chain IDs:C (auth: 4)
Chain Length:933
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Description:Minichromosome maintenance protein 5
Mutations:R549A
Chain IDs:D (auth: 5)
Chain Length:775
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Description:DNA replication licensing factor MCM6
Chain IDs:E (auth: 6)
Chain Length:1017
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Description:DNA replication licensing factor MCM7
Chain IDs:F (auth: 7)
Chain Length:845
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Description:Cell division cycle protein CDT1
Chain IDs:G (auth: 8)
Chain Length:604
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Description:Origin recognition complex subunit 1
Chain IDs:H (auth: A)
Chain Length:949
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Description:Origin recognition complex subunit 2
Chain IDs:I (auth: B)
Chain Length:560
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Description:Origin recognition complex subunit 3
Chain IDs:J (auth: C)
Chain Length:616
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Description:Origin recognition complex subunit 4
Chain IDs:K (auth: D)
Chain Length:529
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Description:Origin recognition complex subunit 5
Chain IDs:L (auth: E)
Chain Length:479
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Description:Origin recognition complex subunit 6
Chain IDs:M (auth: F)
Chain Length:435
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polydeoxyribonucleotide
Description:DNA
Chain IDs:N (auth: X), O (auth: Y)
Chain Length:42
Number of Molecules:2
Biological Source:synthetic construct
Primary Citation
Unidirectional MCM translocation away from ORC drives origin licensing.
Nat Commun 16 782 782 (2025)
PMID: 39824870 DOI: 10.1038/s41467-025-56143-y

Abstact

The MCM motor of the eukaryotic replicative helicase is loaded as a double hexamer onto DNA by the Origin Recognition Complex (ORC), Cdc6, and Cdt1. ATP binding supports formation of the ORC-Cdc6-Cdt1-MCM (OCCM) helicase-recruitment complex where ORC-Cdc6 and one MCM hexamer form two juxtaposed rings around duplex DNA. ATP hydrolysis by MCM completes MCM loading but the mechanism is unknown. Here, we used cryo-EM to characterise helicase loading with ATPase-dead Arginine Finger variants of the six MCM subunits. We report the structure of two MCM complexes with different DNA grips, stalled as they mature to loaded MCM. The Mcm2 Arginine Finger-variant stabilises DNA binding by Mcm2 away from ORC/Cdc6. The Arginine Finger-variant of the neighbouring Mcm5 subunit stabilises DNA engagement by Mcm5 downstream of the Mcm2 binding site. Cdc6 and Orc1 progressively disengage from ORC as MCM translocates along DNA. We observe that duplex DNA translocation by MCM involves a set of leading-strand contacts by the pre-sensor 1 ATPase hairpins and lagging-strand contacts by the helix-2-insert hairpins. Mutating any of the MCM residues involved impairs high-salt resistant DNA binding in vitro and double-hexamer formation assessed by electron microscopy. Thus, ATPase-powered duplex DNA translocation away from ORC underlies MCM loading.

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