9GGD image
Deposition Date 2024-08-13
Release Date 2025-04-16
Last Version Date 2025-07-02
Entry Detail
PDB ID:
9GGD
Keywords:
Title:
Structure of the A467T mutant of human mitochondrial DNA polymerase gamma in complex with PZL-A
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.67 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:DNA polymerase subunit gamma-1
Gene (Uniprot):POLG
Mutations:A467T
Chain IDs:A
Chain Length:1221
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:DNA polymerase subunit gamma-2
Gene (Uniprot):POLG2
Mutations:A169T
Chain IDs:B, C
Chain Length:467
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polydeoxyribonucleotide
Molecule:DNA (primer strand)
Chain IDs:D (auth: P)
Chain Length:25
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:DNA (template strand)
Chain IDs:E (auth: T)
Chain Length:40
Number of Molecules:1
Biological Source:synthetic construct
Primary Citation

Abstact

Mammalian mitochondrial DNA (mtDNA) is replicated by DNA polymerase γ (POLγ), a heterotrimeric complex consisting of a catalytic POLγA subunit and two accessory POLγB subunits1. More than 300 mutations in POLG, the gene encoding the catalytic subunit, have been linked to severe, progressive conditions with high rates of morbidity and mortality, for which no treatment exists2. Here we report on the discovery and characterization of PZL-A, a first-in-class small-molecule activator of mtDNA synthesis that is capable of restoring function to the most common mutant variants of POLγ. PZL-A binds to an allosteric site at the interface between the catalytic POLγA subunit and the proximal POLγB subunit, a region that is unaffected by nearly all disease-causing mutations. The compound restores wild-type-like activity to mutant forms of POLγ in vitro and activates mtDNA synthesis in cells from paediatric patients with lethal POLG disease, thereby enhancing biogenesis of the oxidative phosphorylation machinery and cellular respiration. Our work demonstrates that a small molecule can restore function to mutant DNA polymerases, offering a promising avenue for treating POLG disorders and other severe conditions linked to depletion of mtDNA.

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Protein

Chemical

Disease

Primary Citation of related structures