9GFM image
Deposition Date 2024-08-09
Release Date 2025-08-20
Last Version Date 2025-08-20
Entry Detail
PDB ID:
9GFM
Keywords:
DNA BINDING PROTEIN
Title:
CryoEM structure of the human INO80 core-nucleosome complex state N-7
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
synthetic construct (Taxon ID: 32630)
Host Organism:
Trichoplusia ni
Method Details:
Experimental Method:
ELECTRON MICROSCOPY
Resolution:
3.80 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
9GFM validation report
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:INO80 complex subunit B
Gene (Uniprot):INO80B
Chain IDs:A (auth: H)
Chain Length:50
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:Q9C086
Polymer Type:polydeoxyribonucleotide
Molecule:Nucleosomal DNA strand 1
Chain IDs:B (auth: K)
Chain Length:139
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:Nucleosomal DNA strand 2
Chain IDs:C (auth: L)
Chain Length:139
Number of Molecules:1
Biological Source:synthetic construct
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Histone H3.1
Gene (Uniprot):H3C1, H3C2, H3C3, H3C4, H3C6, H3C7, H3C8, H3C10, H3C11, H3C12
Chain IDs:D (auth: M)
Chain Length:93
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P68431 Pfam ID:PF00125
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Histone H4
Gene (Uniprot):H4C1, H4C2, H4C3, H4C4, H4C5, H4C6, H4C8, H4C9, H4C11, H4C12, H4C13, H4C14, H4C15, H4C16
Chain IDs:E (auth: N)
Chain Length:82
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P62805 Pfam ID:PF15511
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Histone H2A type 1-B/E
Gene (Uniprot):H2AC4, H2AC8
Chain IDs:F (auth: O)
Chain Length:106
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P04908 Pfam ID:PF00125, PF16211
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Histone H2B type 2-E
Gene (Uniprot):H2BC21
Chain IDs:G (auth: P)
Chain Length:96
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:Q16778 Pfam ID:PF00125
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Histone H3.1
Gene (Uniprot):H3C1, H3C2, H3C3, H3C4, H3C6, H3C7, H3C8, H3C10, H3C11, H3C12
Chain IDs:H (auth: Q)
Chain Length:100
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P68431 Pfam ID:PF00125
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Histone H4
Gene (Uniprot):H4C1, H4C2, H4C3, H4C4, H4C5, H4C6, H4C8, H4C9, H4C11, H4C12, H4C13, H4C14, H4C15, H4C16
Chain IDs:I (auth: R)
Chain Length:79
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P62805 Pfam ID:PF15511
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Histone H2A type 1-B/E
Gene (Uniprot):H2AC4, H2AC8
Chain IDs:J (auth: S)
Chain Length:111
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P04908 Pfam ID:PF00125, PF16211
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Histone H2B type 2-E
Gene (Uniprot):H2BC21
Chain IDs:K (auth: T)
Chain Length:93
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:Q16778 Pfam ID:PF00125
Ligand Molecules
NA
Primary Citation
CryoEM structure of the human INO80 core-nucleosome complex state N-7
To Be Published ? ? ? (?)
Primary Citation of related structures
9GFM