9GF6 image
Deposition Date 2024-08-08
Release Date 2025-08-20
Last Version Date 2025-08-20
Entry Detail
PDB ID:
9GF6
Keywords:
DNA BINDING PROTEIN
Title:
CryoEM structure of the human INO80 core-nucleosome complex state N-6
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
synthetic construct (Taxon ID: 32630)
Host Organism:
Escherichia coli
Method Details:
Experimental Method:
ELECTRON MICROSCOPY
Resolution:
3.80 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
9GF6 validation report
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:INO80 complex subunit B
Gene (Uniprot):INO80B
Chain IDs:K (auth: H)
Chain Length:356
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:Q9C086 Pfam ID:PF04795, PF04438
Polymer Type:polydeoxyribonucleotide
Molecule:Nucleosomal DNA Strand 1
Chain IDs:A (auth: K)
Chain Length:152
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:Nucleosomal DNA Strand 2
Chain IDs:B (auth: L)
Chain Length:152
Number of Molecules:1
Biological Source:synthetic construct
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Histone H3.1
Gene (Uniprot):H3C1, H3C2, H3C3, H3C4, H3C6, H3C7, H3C8, H3C10, H3C11, H3C12
Chain IDs:C (auth: M), G (auth: Q)
Chain Length:136
Number of Molecules:2
Biological Source:Homo sapiens
UniProt ID:P68431 Pfam ID:PF00125
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Histone H4
Gene (Uniprot):H4C1, H4C2, H4C3, H4C4, H4C5, H4C6, H4C8, H4C9, H4C11, H4C12, H4C13, H4C14, H4C15, H4C16
Chain IDs:D (auth: N), H (auth: R)
Chain Length:102
Number of Molecules:2
Biological Source:Homo sapiens
UniProt ID:P62805 Pfam ID:PF15511
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Histone H2A type 1-B/E
Gene (Uniprot):H2AC4, H2AC8
Chain IDs:E (auth: O), I (auth: S)
Chain Length:129
Number of Molecules:2
Biological Source:Homo sapiens
UniProt ID:P04908 Pfam ID:PF00125, PF16211
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Histone H2B type 2-E
Gene (Uniprot):H2BC21
Chain IDs:F (auth: P), J (auth: T)
Chain Length:125
Number of Molecules:2
Biological Source:Homo sapiens
UniProt ID:Q16778 Pfam ID:PF00125
Ligand Molecules
NA
Primary Citation
CryoEM structure of the human INO80 core-nucleosome complex state N-6
To Be Published ? ? ? (?)
Primary Citation of related structures
9GF6